| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3707 |
|---|
| Symbol | |
|---|
| ID | 4254270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4424736 |
|---|
| End bp | 4425641 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638120349 |
|---|
| Product | ornithine carbamoyltransferase |
|---|
| Protein accession | YP_735827 |
|---|
| Protein GI | 113972034 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0078] Ornithine carbamoyltransferase |
|---|
| TIGRFAM ID | [TIGR00658] ornithine carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATT TACTATCGAT AAAAGAGTTA ACCCAGCAAC AGTTGCTGGA TCTGATTACC
TTAGCCAAGA CGATTAAAGC GAATCCCGCT GAGTATCGTC ATGCGCTGGA CGGTAAGAGT
GTGGTGATGT TATTTGAAAA GCCATCCCTG CGTACTCGTG TTAGCTTCGA TATCGGTATT
AACAAGCTCG GCGGCCACTG TTTATACCTA GACCAACAAA ATGGTGCCTT AGGTAAGCGG
GAATCGGTCG CTGACTTTGC TTCTAACCTG TCCTGTTGGG CCGATGCTAT TGTGGCGAGA
ACGTTCTCCC ACAAGACCAT CGAACAATTG GCCGAGTTTG GCACTGTGCC TGTGATTAAT
GCGCTTTCGG ATTTATATCA TCCTTGCCAA GCGCTGGCCG ATTTCTTAAC TTTGGCCGAG
CATTTTGAAA ATATCAGTGA TGTCAAGTTA GCGTACGTAG GTGACGGTAA TAACGTGACG
AATTCATTGA TGTATTGCGC GGCCATTCTC GGTGCCACCA TGACAGTGAT CTGCCCAGCG
GGTCACTTTC CTGATGGCTA CGTCGTGGCC GAAGTACAAG AACTTGCCAG CCGATATGGC
GGCAAAGTTG TACTGACTTC AGATATTGGT GCTATCGAAG GTCACGATGC TATCTATACT
GATACCTGGA TTTCCATGGG TGATCCAACA CCGTTAGCGG AAATTAAGGA TAAGTTTGCA
CCTTATCAGG TCAATAAGGG CTTGATGGCG AAAGCGGGTG CTCACTTCTT TATGCACTGC
TTACCCGCTC ACCGCGGTGT TGAAGTGACC GATGAAGTGA TGGATGGCGA AGGCTCTTTG
ATCCTGCAAC AAGCAGAGAA TCGGATGCAC GCCCAAAACG CAGTACTGGT AACCCTATTT
AGTTAA
|
|---|
| Protein sequence | MKHLLSIKEL TQQQLLDLIT LAKTIKANPA EYRHALDGKS VVMLFEKPSL RTRVSFDIGI
NKLGGHCLYL DQQNGALGKR ESVADFASNL SCWADAIVAR TFSHKTIEQL AEFGTVPVIN
ALSDLYHPCQ ALADFLTLAE HFENISDVKL AYVGDGNNVT NSLMYCAAIL GATMTVICPA
GHFPDGYVVA EVQELASRYG GKVVLTSDIG AIEGHDAIYT DTWISMGDPT PLAEIKDKFA
PYQVNKGLMA KAGAHFFMHC LPAHRGVEVT DEVMDGEGSL ILQQAENRMH AQNAVLVTLF
S
|
|---|
| |