| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3704 |
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| Symbol | |
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| ID | 4254267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4419421 |
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| End bp | 4421940 |
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| Gene Length | 2520 bp |
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| Protein Length | 839 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120346 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_735824 |
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| Protein GI | 113972031 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.2288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.759568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAGTGGT TAAAACGTAT TGTTATAGCC CTATTCAGTC TAGCCCTTTT GGGCGTGGGC
GCCATTGTTG CAGCATACTT TTATGTTTTG CCGGATCTGC CGGATGTATC GACACTAAAA
AATGTGCAAT TACAAACACC TTTGCGCATT TACAGTAGCG ATGGCAAGCT CATCTCTCAG
TTTGGTGAGA AGCGTCGCAT TCCGCTGAAA CTCGAAGAAG TGCCTAAAAC GCTGCTCCAA
GCCTTCCTCG CCACCGAGGA TGCACGCTTT TATGAGCACG GCGGTATCGA TCCTGTTGGG
GTGATGCGTG CCGCAATCGT CATGCTCACC ACGGGTGAAA AGAAACAAGG CGCGAGTACT
ATCACCATGC AGGTGGCGCG TAACTTCTTC CTGACCCGCG ACAAGACCAT TATTCGTAAA
GTGAAGGAAA TTTTTATTTC CTACCACATC GAGCAATTGT TAACTAAAGA TGAGATTTTA
GAACTCTACG TTAACCGTAT TTATTTAGGT CAGAGAGCCT ATGGTGTCGG CGCGGCTGCT
CAAGTGTATT TTGGTAAAAA CGTTCAAGAT CTGACGCTTT CCGAAATGAG TATGATCGCG
GGTCTCCCTA AAGCACCGTC GACTCTAAAC CCTATTACCT CCCCTTCACG CGCACTTGCA
CGCCGCAACG TGGTATTGAT GCGAATGAAC GAAGTGGGCT ACATCAGCAA GGCTGAATAC
CAAGCTGCTG TGCAAGAGCC GCTCGTCGCC AAATACCATG GTGCTGAAAT CGACCTTTAC
GCCCCTTATA TCTCTGAAAT GGCTCGAGAT TACATGGTGC AAAAATACGG TGAAGAAGAG
GCCTACACGA ACGGCTATAA CGTCTACACC ACGATTTCAT CAGAGCAGCA ACTGCTAGCA
CAGCAAGCAT TACGCAATAA CGTCTATGCC TATGATGAGC GCCACGGTTA CCGTGGTCCT
GCGGCAGTTT TATGGACCGA CACTAAGCCA GACGATGCAC AAATCAAAGC CGAGCTCGCT
AAAATTACGC CTGTACAAGA GTTGCAACCC GCTGCGGTAT TAAGCATCGA TGGACAGCAA
GCCAGTGTGT TAACCGCCAA GGGCGAAACC AAAGTCATCA AATGGGATGG CCTAAAATGG
GCGCGTAAAT TTATCACCGA TAAACGCCAA GGCTCGGTGC CAAAATCGGC CTCGGATATG
CTGAAAGTCG GTGAACGTAT TTGGATCCGC GACAATGGCC AGTATCTACA ATTATCGCAA
GTGCCAGAAG TGGCCAGTGC CACTGTTGCA CTCGATCCTA CAAATGGTGC TATCCGAACC
TTAGTGGGTG GCTACAGCTT TAGCCAAAGC CAGTACAACC GTGTAACTCA AGCGAAACGT
CAATTAGGTT CGAATATTAA ACCTTTCATC TATGCTGCGG CATTAGAGAA AGGCTTTACC
CTCGCGACTC TGATTAACAA CGCGCCGATT AACAAACCCG ATATTAGCCA AGGTACTGCG
TGGCGCCCTA AAAACTCGCC CGATATCTAT GGCGGCCCAA CACGCCTGCG TGTGGGGTTA
GCGCAATCGA TCAACGTAAT GTCTGTTCGC GCTATGCGCC ATATTGGTTT AGATGCGGCC
ATCGCCGAGC TGACTAAGTT TGGATTCGAT CCTAACGACT TACCTCGTAA CGAGTCGTTA
GCCTTAGGTT CTCCTTCGGT CACCCCACTG CAAGTGGCAA CCGCTTTCAA CGTGTTCGCA
AATGGTGGTT TCTTAGTTGA ACCTTTCTAT ATCGAACGAG TAGAAGACTC CTTCGGTAAT
GTGATTGAGA AGGCCAATCC GACCTTGGCC TGTAAGCCTA ACAACAGCTC CGTACAGCCT
AGCAGCGATC CAATGAGTTT TGGTGAGCCC GCAGCTCAAA CCGATGAGCC TGTGGCCTAT
TGCTTCGAAC AAACTGGCCG TTATGCTCCG CAAATTATCT CTGAACAAAC GGCATTCCTG
ATCACCGAAG CGCTGAAGAG CGTGATCTGG GGTGGCGGCG ATTGGAGTAA AGGCACTGGC
TGGCAGGGTA CGGCTTGGCG TGCGGCGCAG TTAATCAAAC GCCATGATAT TGCGGGTAAA
ACCGGTACAA CAAACGAGTC TCGCGATACC TGGTTCAGTG GTTTTGGCCC AACACTCACC
AGCACCTTCT GGGTAGGGTT TGACGACCAT GGTCGCCAAT TAGGCAGAAC CGCATGGAAC
CCGAATGGTG AGAAGGATCA GATCACAGGC ACAGAGGCAG GCGCTAAGAC CGCAGGCCCT
GGCTGGAACG AGTTTATGAA TAACGTGCTG AAGGGCGTAC CTGAAACCAC AGCGATCCCA
CCCGAAGGGA TTGTCTCGGT GCGGATCGAT CTGGCGACCG GCAAACTGAC TCGTAAGACA
GACTACACTA GCGCATTTGA ATACTTTATC TCGGGCACTG AACCTAAGGA ATACATCAGT
GAAAGCCAAG ATGAAAACAA CCTATTCATC GATGCGCCGA CAGACGATTT ATTCCAATAG
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| Protein sequence | MKWLKRIVIA LFSLALLGVG AIVAAYFYVL PDLPDVSTLK NVQLQTPLRI YSSDGKLISQ
FGEKRRIPLK LEEVPKTLLQ AFLATEDARF YEHGGIDPVG VMRAAIVMLT TGEKKQGAST
ITMQVARNFF LTRDKTIIRK VKEIFISYHI EQLLTKDEIL ELYVNRIYLG QRAYGVGAAA
QVYFGKNVQD LTLSEMSMIA GLPKAPSTLN PITSPSRALA RRNVVLMRMN EVGYISKAEY
QAAVQEPLVA KYHGAEIDLY APYISEMARD YMVQKYGEEE AYTNGYNVYT TISSEQQLLA
QQALRNNVYA YDERHGYRGP AAVLWTDTKP DDAQIKAELA KITPVQELQP AAVLSIDGQQ
ASVLTAKGET KVIKWDGLKW ARKFITDKRQ GSVPKSASDM LKVGERIWIR DNGQYLQLSQ
VPEVASATVA LDPTNGAIRT LVGGYSFSQS QYNRVTQAKR QLGSNIKPFI YAAALEKGFT
LATLINNAPI NKPDISQGTA WRPKNSPDIY GGPTRLRVGL AQSINVMSVR AMRHIGLDAA
IAELTKFGFD PNDLPRNESL ALGSPSVTPL QVATAFNVFA NGGFLVEPFY IERVEDSFGN
VIEKANPTLA CKPNNSSVQP SSDPMSFGEP AAQTDEPVAY CFEQTGRYAP QIISEQTAFL
ITEALKSVIW GGGDWSKGTG WQGTAWRAAQ LIKRHDIAGK TGTTNESRDT WFSGFGPTLT
STFWVGFDDH GRQLGRTAWN PNGEKDQITG TEAGAKTAGP GWNEFMNNVL KGVPETTAIP
PEGIVSVRID LATGKLTRKT DYTSAFEYFI SGTEPKEYIS ESQDENNLFI DAPTDDLFQ
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