| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3699 |
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| Symbol | |
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| ID | 4254262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4414364 |
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| End bp | 4416418 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638120341 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_735819 |
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| Protein GI | 113972026 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0929214 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAATCCCG TTATCGTTTT TATCTTCAGG CTTAGCTAAG
TCTGTTATTG GGATCGCATT AGTATTTGGA TTTTTGCCAT CGAGTTTTGC GGCAAATAGA
TTGATGGATG TCAAATACCA TGCTTTGGTC GATCATCAAT TAGAAGTCGA ATTAGTGTTT
GAGGACGCTA TTAGCGCACC CAAAATTGAC TCTAATGCTG CTCCTGCCCA GTTGGTATTA
ACCTTCGATG ACAGTATTTC GGGTCTTTCT AAAGATCGTC TCCCGATCAA TCAAGTCGGC
GTGAAGGATA TAGTGACGAC CCAGCAAGAC GCTAATTTAA TGGTGACCTT GGGGTTATCT
AAGGTTAAAC CCTATCAAGG TAGCGTAGTT GGTAATTCCT ACCGTCTAAC GATTAACGAT
GAAGTTGCAG GCAGTCAAGC CGGTAATAAT CCTTTCGTTA ATAGCGTTAA AAATATCGAT
TTTCGTCGCA ACGCTAATGG TGGTGGTGAT TTATTAGTCT ATTTAAATAA TCGCTCGGTT
GCTGCAAACG TTGAACAGAT TGGCGCCAAG CTTGAAGTTC AGCTTTACAA CACAGATATT
AACAGCGACT TGTTATATGT GATGGATGTG CAGGATTTCT CCACACCGGT AAAGCATTTT
GAAACCTTTA AGGACGATTT AACGACCCGG ATTTTAGTCG ATGTCTCGGG TAATTATGAG
TTCAATTACA AACAGGAAGA TAATCTCTTT AGGCTCTCAA TCAACAAGGT AGAGCGTGCC
GCGGCGACAA AAGAGGTAAA GAAATATAAC GGTAAAACCC TTTCGTTAAA TTTCCAGAAT
ATTTCAGTAC GTACCGTATT GCAGATTATT GCCGATTATA ACAACTTCAA CTTAGTCACG
AGCGACACAG TTGAAGGTGA TATCACCTTA AGACTCGATG ATGTGCCTTG GGACCAAGCA
TTGGATTTGA TTCTGCAAAC CAAAGGGCTC GATAAGCGTA TCGAAGGCAA TATTCTTATG
GTGGCGCCAA GTGAAGAGCT GGCGATTCGT GAAAGTCAAA ACCTTAAAAA TAAACAAGAA
GTTAAAGAGC TGGCACCACT CTATTCTGAA TATCTTCAGA TTAACTATGC CAAGGCGACC
GACATAGCAG AGCTATTAAA AGGTGCTGAT TCGAGTTTAT TGTCTCCTCG CGGTTCAGTG
GCTGTCGATG AGCGTACCAA CACAGTGTTA GTGAAAGATA CTGCTGAAAT CATCGAGAAT
ATCCATCGTT TGGTTGAAGT GCTCGATATT CCTATCCGCC AAGTGTTGAT TGAATCTCGC
ATGGTCACGG TAAAAGACGA CGTGTCTGAA GATTTAGGTA TCCGTTGGGG CGTGACTGAT
CAGCAGGGTA GCAAAGGGAC GTCAGGAACC CTTGAAGGCG CAGGCAGCAT TGCCAATGGT
ACTGTGCCAA CACTGGATAA CCGTTTGAAC GTGAATTTAC CTGCGGCGGT GACAAACCCT
ACCAGCATTG CTTTCCATGT GGCAAAGCTT GCCGATGGCA CCATCTTAGA TTTAGAGCTG
AGTGCGCTTG AGCAGGAAAA CAAAGGTGAG ATTATCGCGA GCCCTCGCAT TACCACCTCT
AACCAAAAAG CGGCGTATAT CGAGCAGGGT GTGGAAATCC CTTATGTGCA ATCCACTTCG
AGCGGCGCGA CGTCGGTGAC CTTTAAGAAG GCGGTATTGT CATTAAGAGT GACACCACAA
ATTACTCCTG ATAACCGCGT GATTCTGGAT CTTGAAATCA CTCAAGACTC TCAGGGTAAA
ACGGTGGATA CTCCCACAGG TCCGGCAGTC GCTATCGATA CTCAACGTAT TGGTACGCAA
GTGTTAGTGG ATAATGGAGA AACCATTGTG CTCGGTGGTA TTTATCAGCA GAATTTAATC
AGCCGCGTGA GCAAGGTGCC TATCTTGGGT GACATTCCTT TAGTTGGCTT CTTATTCCGT
AACACTACCG ACAAGAATGA GCGCCAAGAG CTGTTGATTT TCGTGACGCC TAAAATTGTG
AACGAGAAGC TCTAA
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| Protein sequence | MKSSAAIKIP LSFLSSGLAK SVIGIALVFG FLPSSFAANR LMDVKYHALV DHQLEVELVF
EDAISAPKID SNAAPAQLVL TFDDSISGLS KDRLPINQVG VKDIVTTQQD ANLMVTLGLS
KVKPYQGSVV GNSYRLTIND EVAGSQAGNN PFVNSVKNID FRRNANGGGD LLVYLNNRSV
AANVEQIGAK LEVQLYNTDI NSDLLYVMDV QDFSTPVKHF ETFKDDLTTR ILVDVSGNYE
FNYKQEDNLF RLSINKVERA AATKEVKKYN GKTLSLNFQN ISVRTVLQII ADYNNFNLVT
SDTVEGDITL RLDDVPWDQA LDLILQTKGL DKRIEGNILM VAPSEELAIR ESQNLKNKQE
VKELAPLYSE YLQINYAKAT DIAELLKGAD SSLLSPRGSV AVDERTNTVL VKDTAEIIEN
IHRLVEVLDI PIRQVLIESR MVTVKDDVSE DLGIRWGVTD QQGSKGTSGT LEGAGSIANG
TVPTLDNRLN VNLPAAVTNP TSIAFHVAKL ADGTILDLEL SALEQENKGE IIASPRITTS
NQKAAYIEQG VEIPYVQSTS SGATSVTFKK AVLSLRVTPQ ITPDNRVILD LEITQDSQGK
TVDTPTGPAV AIDTQRIGTQ VLVDNGETIV LGGIYQQNLI SRVSKVPILG DIPLVGFLFR
NTTDKNERQE LLIFVTPKIV NEKL
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