| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3633 |
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| Symbol | |
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| ID | 4254197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4342684 |
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| End bp | 4347198 |
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| Gene Length | 4515 bp |
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| Protein Length | 1504 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120276 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_735754 |
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| Protein GI | 113971961 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATAGGGG TAACTTTGAG CCATCCAATC CTTAAATTCG TCTTAGTCGT GCTCTGTCTT
ATTAGCTTAG GGGCTCCGCG AACAGGCTTG GCACTCCCCT TAAATGCGGC TAACACACAG
CTGAAATTTG AACATATCCG CAGCGAAGAA GGCTTAAATC AAAATACCAT TACCAGCCTG
TTTATGGACA GCGCAGGCAT GCTTTGGATT GGTACTCAGG ATGGATTACA CAGCTACAAC
GGTTACAACT TCAACCTCTT TATCCACTCG CCGAACGATC CTAAGAGCGT TTCCGAAAGC
TATGTATCAG ACATTATTCA AGATGCGCAT GGCTATATCT GGGTTGGCAC TTTTAGCCAA
GGGATCAACC GTTTAGATTT AAAAACGGGC ACCTTCGAGC GCTTCGGTGT CGAGCAAGGC
CTGACCGACC CTAGAGTCAC TAAACTCAAC ATTGTTGGCA ATACCCTCTG GATCGGCACT
CAGGGCGGAT TATTTTCACT CTCAACCCGC ACCAACAGAG TCACTCAAGT GTCATTGGGG
ACGAGTATCG AACCCCAAAT CACTAGCCTA GCCAATGTGG ATAACACCTA TTTATTGGCA
GGCACTAAGG CCAGTGGCAC CTTTGCCGTG ACGGCCAATT CCATCACTCG ACTCAATGTA
CCGCAGGAGC TGGTTGCCTA TCAGATTAAG GCCAATTCAA CCCGCGCCAT TACCTTAGCG
CTCGGTAATC AGCTCTGGCA CTATGATCTA GTGTCACAAC AGGGACAAGT GCTATGGCAA
ACAGAAAAAA ACGTCCCTTA TATCAAAGAT TTTATCCAAA CACCCCAAGG TCAGTTTTGG
GTGGTTGGAC CCGATGCGGG TTTGATCCAG TTACAGAGGG CAGGAGAACA ATTTGGCGCG
ACCTATCATA GGTACGATAC CAAGCGTTCG AATAGCATCA GCGAAAATAA CATCCTATGT
CTTTTAGAGG ATCCATTCGG CAATCTATGG ATTGGCGCAA GTTATTCGGG GCTGAATAAG
ATCAATACTC GCCGGCAATA TTTTCAGCAT TTATTTGAAT ACTCAGCAAA ACTACCCCTG
CAAAGTAATA ATATCCGCAC CATTTACCGC AGCCAAGATA ACGCACTATG GATAGGCACA
GAAGGCGCAG GGCTGAAACG ACTCGGCTTC AATAGCACTC AATACGAGCA CTACAACTCC
CTGTTTGCCA AGGCCCTAGG TCTAGAAGCG CACAACTTAA ACCTGATCCT ACGCTCAATT
ATCCAAGACC AGCAAGGCAC GCTCTGGTTT GCCAGTAACT ATGGATTAGG CCGCCTGAGC
ACTGGCGGTG ATTTTAGCCT ACTAAAGGTA TCAGATAATC AAGATACCTC CACAGAAGCA
AACTATATCC GTAGCTTAGA ACTAGATGAC CAGAACAGGC TGTGGGTCGC GACATCCCAT
GCCTTGTACC GAAAAGCGCC AGAGGGCAAT GAATTTACGC CGGTTTCAAT CGCTCACATT
GAAAATTTCT ACCCCATGCA AAATCAGCTA CTCACGTTAA GAGCAGACAA GCATGCTCTG
TGGATTGGCT CGCTCAATGG CTTAGTGAAA CTGGATATGC AAACGGGGAA AGGGGAAGCG
TTCTACCACG ACCCCCATGA CAAAAATACC ATTATAAACA ATCGCATTAG AGACATTTTA
GTCGCCAGCA ATGGCGATAT CTGGTTTGCC ACCCATGGCG GCATCAGTCG ATTATCGGCC
CAAGCCACGA CACCGATTTT CAGTGATTAT ACCCGCGAAC AAGGCCTGCC CAGTGACACT
ATCTATGCTC TGCTTGAGGA TGCCGAACAT CATATTTGGT TTAGCAGCAA TGCGGGGATC
GGCAAGTTAA ATCCCGTTAG CGGCAAAGTC ATCAATTTTA ATGAACAGGA AGGCCTGCAG
GCGCTGGAGT TTAACGGTGG CGTAAAACTT AAAGACAGTG ATGGCGACCT GTGGTTTGGC
GGGATAAACG GGATCAACCG CTTTAATCCT AAAGCATTGC CCGACAAACG GGGCGAAGCC
CGAGTCGCAC TCACCGCCTA TAAGATTGCG GGTAAAAAAC ATACTATCCT CGACCTCAGC
CATCCACCCA AAATCGTGAT GAACTATACC GACCAATTGG TCAGCTTTGA GGTCACCTCA
CTGGATTTTA GCTACACGGG CAAAAATCGC TTTAGCTACT ACCTCGAAGG CTTTGATAAC
CAATGGCACG ATTTGCCCAC GGGAAATGAA ATCACCTTTA CCAATATAGA ACCAGGCAAC
TACGTGTTGC ATGTACGTCA CTCCATTGAG CACAACAACG AAGGTAACTA TGCGCTGCTG
GTCGATTTAA GCATCAAGGC CCCCTTATAC CGCACTCAAT TTGCCTATGT GCTTTATGGA
CTACTAACAT TAGCCTTGTT GGTCGTTGTT TATCGTTGGC GTAAGCAAAA ACGCCAACAG
CAACAAGAGT TTGATACCAG CATCCGCGCC TCCGAAGAGC GGCTAAAATT GGCGCTCTGG
GCTTCGGGCG ATGGTATGTG GGATTGGAAT ATCCAAGAAC AGCAGGTCTA TCGTACTCAT
ACGGATATTC CGGTTCCCCA ATGGAATAGC CACTCTCTGT TACATGACAA TGCTCACCCT
GAAGATAGGG AGCGGTTTAA ACAAGTCTTG ACCGAGCACC TGCTGGGACG CTCCCCTTTC
TTTGAAGTGG AATATCGTAT CGAGCATTCA CCGGGCAACT GGCTATGGAT CCTTGAGCGC
GGCAAAGTGG TCGAAACCAA TGCACAGGCT CAGCCCGTTC GAATGACGGG CACCACCCGC
AATATCACCT CGCGCAAGCT GATCGAGAAT GAGCTAGTGC TCTCCTCTCA AGTACTTAAC
AGCATGAACG AGGCCGTTGT GGTGGCAGGT CTAGACTACC GGATCCGCTC GGTAAACCCC
GCCTTTAGCG CCATTACCGG ATATTCGGAG CGGCAAATCA GCGATAAGTA TTTAATTCAT
TTAGCCTACA GCCGACAACA GCGAGATCTC TTCAATGGCA TTGAACAGCA ACTGCTGCGT
CATAAACATT GGGCGGGTGA AATTTGGATC CGCAACAAGG CGCGCAAGGC GATTCTGGTG
TGGCTCGAGA TCAACCAAGT TATCGATGTG AAAGGGGAAA CCAGTCACTT TGTGGCGGTG
TTTACCGATA TTACAGAGCG TAAAAAGGCC GAAGAGGATC TCCGCTTCCT CGCCAGCTTC
GACACCTTGA CTGGGCTGCC GAATCGCACC TTGTTCCAGG ACAGGCTCAA CCACGCCATA
TCTCAAGCCC ATAGGTCGAA TAATATCGTC GCCCTGCTGT TTTTAGACCT CGACCGCTTT
AAGCATATCA ATGACTCAAT GGGGCACCAT ATTGGCGATC TGCTGCTCAA AGCCGTGGCC
CACAGGCTGC AAAGTGCTGT TCGCGAAGGG GATACAGTGG CCCGTTTAGG CGGCGATGAA
TTTACCATTA TTTTGGAAGG TGTGGCGAAA ACCAAGGCGG CGACGCTGAT CTCCGAGAAA
GTGCTCAAAG CCTTTCAGGC GCCCTTCTTA CTCGATGATA AGTCCCTGAC TATCTCAACT
TCGATTGGTA TCAGCCTCTA TCCCAATGAT GCGGAAGATG TAGATTCGCT GATTAAGTTT
GCCGATACCG CCATGTACCA CGCCAAGGCG CTCGGTCGGA ATAACTTTCA GTTTTACACC
AATAAACTCA ATGAGATGGC AACGCGCCAT GTGCAACTCG AGGCAGGGCT TAAACAGGCC
ATCTCACGCA ACGAGTTAAG CTTGGTGTAT CAACCCAAGT TTTGTTTACG CAATGGCTCA
CTCACTGGAC TTGAGGCGCT GCTGCGTTGG CATCATAGTG AACTAGGCCC TATCTCACCC
ACCGAGTTTA TTCCACTGGC GGAGGAAACC GGCATCATTA ACCAAATTGG CCATTGGGTG
ATCAACCACG CTTGTCAGCA ACTTGCAGAG TGGAATGAGC TGGGTTTGGG CGATATCAGC
ATGGCGGTGA ACCTTTCGGC CAGGCAGTTG AAGGCCGATA TTATCTCGAC CATCGAAGTA
GCTCTCGCGG TATCCGGCCT ACCCGCCAAG GCGCTCGAGC TGGAATTAAC CGAGTCGATG
ATCATGGGTA ATCCACAGGA ATCGGTAAAT ATCCTCTCTA AACTCAAGGC ACTAGGTTTA
ACCATCGCCG TGGATGATTT TGGTACTGGC TACTCGAGCT TGAGTTATCT TAAACGTTTC
CCTATCGACA CCTTAAAAAT CGACCGTGAG TTTGTGCGCG ACATTACCAA CGACCCCGAC
GATGCGGCCA TTACCAGCGC GATTATCGCC CTCGCCCACA GCCTAGAGTT AAATGTGGTG
GCGGAAGGGG TAGAAACCCA AGAACAGCTG AACTTCTTAG CGCTGCAAGG CTGCGATCAA
GTACAGGGCT TCCTGCTGAG TAAGCCACTC AGCGCCCAGG ATTGCTTAGC GCTGTTGCAA
CAACGGATAA AATAA
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| Protein sequence | MIGVTLSHPI LKFVLVVLCL ISLGAPRTGL ALPLNAANTQ LKFEHIRSEE GLNQNTITSL
FMDSAGMLWI GTQDGLHSYN GYNFNLFIHS PNDPKSVSES YVSDIIQDAH GYIWVGTFSQ
GINRLDLKTG TFERFGVEQG LTDPRVTKLN IVGNTLWIGT QGGLFSLSTR TNRVTQVSLG
TSIEPQITSL ANVDNTYLLA GTKASGTFAV TANSITRLNV PQELVAYQIK ANSTRAITLA
LGNQLWHYDL VSQQGQVLWQ TEKNVPYIKD FIQTPQGQFW VVGPDAGLIQ LQRAGEQFGA
TYHRYDTKRS NSISENNILC LLEDPFGNLW IGASYSGLNK INTRRQYFQH LFEYSAKLPL
QSNNIRTIYR SQDNALWIGT EGAGLKRLGF NSTQYEHYNS LFAKALGLEA HNLNLILRSI
IQDQQGTLWF ASNYGLGRLS TGGDFSLLKV SDNQDTSTEA NYIRSLELDD QNRLWVATSH
ALYRKAPEGN EFTPVSIAHI ENFYPMQNQL LTLRADKHAL WIGSLNGLVK LDMQTGKGEA
FYHDPHDKNT IINNRIRDIL VASNGDIWFA THGGISRLSA QATTPIFSDY TREQGLPSDT
IYALLEDAEH HIWFSSNAGI GKLNPVSGKV INFNEQEGLQ ALEFNGGVKL KDSDGDLWFG
GINGINRFNP KALPDKRGEA RVALTAYKIA GKKHTILDLS HPPKIVMNYT DQLVSFEVTS
LDFSYTGKNR FSYYLEGFDN QWHDLPTGNE ITFTNIEPGN YVLHVRHSIE HNNEGNYALL
VDLSIKAPLY RTQFAYVLYG LLTLALLVVV YRWRKQKRQQ QQEFDTSIRA SEERLKLALW
ASGDGMWDWN IQEQQVYRTH TDIPVPQWNS HSLLHDNAHP EDRERFKQVL TEHLLGRSPF
FEVEYRIEHS PGNWLWILER GKVVETNAQA QPVRMTGTTR NITSRKLIEN ELVLSSQVLN
SMNEAVVVAG LDYRIRSVNP AFSAITGYSE RQISDKYLIH LAYSRQQRDL FNGIEQQLLR
HKHWAGEIWI RNKARKAILV WLEINQVIDV KGETSHFVAV FTDITERKKA EEDLRFLASF
DTLTGLPNRT LFQDRLNHAI SQAHRSNNIV ALLFLDLDRF KHINDSMGHH IGDLLLKAVA
HRLQSAVREG DTVARLGGDE FTIILEGVAK TKAATLISEK VLKAFQAPFL LDDKSLTIST
SIGISLYPND AEDVDSLIKF ADTAMYHAKA LGRNNFQFYT NKLNEMATRH VQLEAGLKQA
ISRNELSLVY QPKFCLRNGS LTGLEALLRW HHSELGPISP TEFIPLAEET GIINQIGHWV
INHACQQLAE WNELGLGDIS MAVNLSARQL KADIISTIEV ALAVSGLPAK ALELELTESM
IMGNPQESVN ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD
DAAITSAIIA LAHSLELNVV AEGVETQEQL NFLALQGCDQ VQGFLLSKPL SAQDCLALLQ
QRIK
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