| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3617 |
|---|
| Symbol | |
|---|
| ID | 4254181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4324195 |
|---|
| End bp | 4325859 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120260 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_735738 |
|---|
| Protein GI | 113971945 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAATG CGATTAAGAC GCCAGTTGAA ATGTTGGCGC ACTGGGCGAA TACACGTGGG
GATGAGATCT ATTTGCGCCA GCCCATCAAG GGTCAATACC TTGATTTCAC GTGGAATGAA
GTGCAAGAAA AAGTGCAGCA ACTCGCGGGT GCACTGCGCC ATTTAGGCTT AGAGCCGGGC
GATAAGATTG CCGTGCTCTC TAAAAACTGC GCCGAATGGT TTATTACCGA CCTCGCCCTG
ATGCACGGCG GCTATATCAG CGTTCCCATC TATCCTACCG CCAATACAGA TACTATCCGC
TATGTGTTGC AACATAGTGG TGCCAAAGCA ATTTTCCTCG GCAAGCTCGA CCACTGGGCC
GATCAAGAAG CCGGCGTCGG CGGCGAATTA CTCCGCCTTG CCATGCCCTA TGAGACCATG
CCGGCTCAAT ATCAGTGGGA ACAACTGCTC AAGATGGGCA ACCCTCTGAT TGAAGCGCCG
TTACCTGAGC TCGATCAGAC CATGACCCTG ATTTACACCT CGGGCTCAAC GGGCCAACCT
AAAGGCGCGA TTCAGACGTT TGCCAGCTAT GGCTGGACTT GCCAAGCCGT AGTGCGCGAT
CTGCGAACCA ATGGTGACGA CAGATTATTG TCCTACTTAC CGTTAGCGCA TATTACCGAG
CGCGTGGCGA TCGAAGGCTC GTCTTTCTAT TCCGGCAGTA CAGTCGCCTT CGTCGAAAGC
TTAGACTCCT TCGTTGCCGA TGTGCAGCGC GCTAAACCGA CGGTGTTTTT CTCGGTTCCA
CGGCTATGGA GCCTGTTCCA GAAGAACATT ATCGACAAGA TTGGTGTTGG CAAACTCAAT
CTATTGCTAA AAATCCCACT GATTAGCAGC CTAGTAAAAC ACAAGATCCA CAAAGGGTTA
GGACTCAACC ATTGCCGCTT ACTCGGCTCT GGTTCGGCGC CTATTCCGCC CTCTCTTATT
CACTGGTACC ACAGCATTGG CTTGGATATT TGTGAAGCCT GGGGAATGAC GGAAAACTGT
GCTTACTCCA TCATCAACTA TCCCTTCGAT GTGCGCAAAA TCGGCACTGT GGGTAAACCC
GTACAGGATT GCCAAATCCG CCAGGGTGAA GACGGCGAAC TGCTACTGAA GAGTCCCGGC
CTGATGACGG CCTATTATCA GCAACCCGAA GCAACAGCGG CGGCCTTCGA TCCCGATGGT
TTCTTCCATA CTGGCGATCT CTGTGCCATC GATGCCGATG GTTGTGTGAC TATCACTGGC
CGGGTGAAGG ACAACTTTAA AACCGCTAAG GGTAAATACG TCGCTCCAGT GCCAATTGAA
CGTAAGCTCG CGCAGGATCC CCATGTGGAG CTGATTTGCG TTATTGGTTC TGGTCTGCCG
CATCCCGTCG CGTTAGTGCA ACTTTCCGAG GGCGCGACCT TACAAGCCCG CGAGGAAGTT
CGCGCATCTT TAAAAGCGAC CCTCGATAGC GTGAACCCAC ATTTAGAGTC CCATGAACAT
GTGGATGCGA TTGTGGTCGT GAACGAACCT TGGACCATCG AAAACGATGT GCTAACTCCG
ACACTGAAGA TCAAACGTCA TGTGCTCGAG AAAGCCTTTA GCGAGCGTGT CGACGGTATT
CGCGGCGCAC AAGTGCGCTG GGAAGATGAG TTAACCGTCA AATAA
|
|---|
| Protein sequence | MDNAIKTPVE MLAHWANTRG DEIYLRQPIK GQYLDFTWNE VQEKVQQLAG ALRHLGLEPG
DKIAVLSKNC AEWFITDLAL MHGGYISVPI YPTANTDTIR YVLQHSGAKA IFLGKLDHWA
DQEAGVGGEL LRLAMPYETM PAQYQWEQLL KMGNPLIEAP LPELDQTMTL IYTSGSTGQP
KGAIQTFASY GWTCQAVVRD LRTNGDDRLL SYLPLAHITE RVAIEGSSFY SGSTVAFVES
LDSFVADVQR AKPTVFFSVP RLWSLFQKNI IDKIGVGKLN LLLKIPLISS LVKHKIHKGL
GLNHCRLLGS GSAPIPPSLI HWYHSIGLDI CEAWGMTENC AYSIINYPFD VRKIGTVGKP
VQDCQIRQGE DGELLLKSPG LMTAYYQQPE ATAAAFDPDG FFHTGDLCAI DADGCVTITG
RVKDNFKTAK GKYVAPVPIE RKLAQDPHVE LICVIGSGLP HPVALVQLSE GATLQAREEV
RASLKATLDS VNPHLESHEH VDAIVVVNEP WTIENDVLTP TLKIKRHVLE KAFSERVDGI
RGAQVRWEDE LTVK
|
|---|
| |