| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3572 |
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| Symbol | murD |
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| ID | 4254136 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4274665 |
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| End bp | 4275984 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638120215 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_735693 |
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| Protein GI | 113971900 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000106941 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAGTC AGTATTCACA CATAGTGTTA GGTTTGGGTG CCACCGGGCT CTCGGTAGTG
CGCTATTTGT GTGGAAAAGG GATCACACCC TTGGTGATGG ATAGTCGTCG CCAACCTCCT
GGTGCGGATA CCCTTGCCAG CGCATTCCCT GAGGTGCAGC TGATTGCCGG CGGATTCGAT
TGCCGTTACT TAGTGCAAGC AAAGCAAATC ATTATCAGCC CAGGCATTGC GATTGATACG
CCTGAGGTTC GCGCTGCACT GGATATGGGG ATTGAAGTCA TTGGCGATGT GGAGCTATTT
GCCCGTGAGA TTGCCGACCG TAAACCTTGT GTGATTGGGA TTACTGGCTC AAATGGCAAG
TCGACCGTTA CCACCTTAGT GGGTGAAATG CTGCGTGAAG CCGGCATGGC GGTGGCCGTG
GGCGGCAATA TTGGTATTCC GGCGCTCGAT CTGCTGACGG AAAATGCCGA TATTTTTGTG
CTTGAGCTGT CGAGCTTCCA GCTCGAAACC ACCCACAGCT TAAACTGCGT GGCGTCGACC
TGTTTGAACG TGACCGAAGA TCATATGGAC AGATACAGCG ATATGGATGC CTATCGCAAG
GCCAAGCTGC GTCTGTACCA TCAAAGCCGC TCCATCATCT TTAACCGTGA TGATGCGCTG
ACTATCCCGA CAGAGCCGAT GAACCAAAAC AGCTTTGGTT TAGCGCCGCC AGAGGGCGAC
GAGTGGGGCA TTTGTGATAG CAAGATTTAC CACGGTCACA GTGAAATTAT GCCGATCACC
GAAGTATCGC TGATTGGTAG TCATAACCAT GCCAACTTAC TCGCTGCCAT GGCGCTGGTG
TATGCCGTGG GCGTAGATAA GCAAGTCATG GCTAAAGTGG CTCGTACCTT TACTGGTCTT
TCTCATCGCT GTGAAGTGGT CGGTGTAAAA GCGGGCGTGA CCTATGTGAA CGATTCGAAG
GCGACCAATG TTGGCGCTAC CGTCGCGGCG CTCGATGGGT TAAGCGACCA CTTAGGTGAC
ATTATTTTGA TTGCTGGTGG TGATGGTAAG GGCGCGGATT TCAGTCCATT GGTCGAGCCG
TTAACGAAAG TGACACACCT CATCACCTTA GGTCGCGATG GCAATAAGAT AGCCGCATTG
AAGGAAGGGG CCATTAAGGT GGACTCTATG GCTGCTGCGG TGGCTAAGGC CGCCGAGTTA
GCCACCTCGG GCGATATCGT ACTCCTATCG CCAGCCTGTG CGAGCCTTGA TATGTACAGC
AACTTTATGG CTCGTGGGGA TGATTTTAGA AGCCAAGTGG AGCAACTCGA TGGCGAGTGA
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| Protein sequence | MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GADTLASAFP EVQLIAGGFD
CRYLVQAKQI IISPGIAIDT PEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK
STVTTLVGEM LREAGMAVAV GGNIGIPALD LLTENADIFV LELSSFQLET THSLNCVAST
CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD
EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM AKVARTFTGL
SHRCEVVGVK AGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLVEP
LTKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAEL ATSGDIVLLS PACASLDMYS
NFMARGDDFR SQVEQLDGE
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