| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3559 |
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| Symbol | |
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| ID | 4254124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4247143 |
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| End bp | 4249020 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638120196 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_735681 |
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| Protein GI | 113971888 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAGT TCGGCGGCTT ATTGGTATTG TTGCTCAGCA TGTTCATATC GACTGGCAGC
TTTGCCAACA CTATGAGCAT AGATGAGCGT ACCCCCACTC CCCTTAACCT TACCCCTTGG
TTAATGGTGA CGCATTCCAA TGCCGATGGT CAGTTAGCCG ATATCCAAGC TCAACCTAAG
TTGGAATGGC ACAAGTTTAC CAATCAGGAT ATTCAACGCC TCAATCAACA TAGTTTTTGG
CTTAGAGTTA ACCTCACTAC TGGCGATGAG CACCTTTCAC GTATTCTCGC CCTAGATAAT
CCCTTGCTGG ATAAAGTGAC GCTTTATCAT TTAGTGGATA ATGAACTCAT CAACACATCG
TATATGGGGG ATACACTGCT CTATAAGGAG CGCCCGCTGC CGAGCAATAT ATTTCTGTAT
CCTTTTAAAC TGAATGCCAA TGAGCAACAC ACCTTCTATC TGCATATCGT CACCGAAGGT
AATGCCGCCG TACCACTAAG TCTTTGGTCA GCCAATGATT TGGCCCAAAT TGCCGAATCG
ACGGCGATTG AACATGGGTT TCAACTCGGT GTACTCGCCG CGATAGGGAT CTTCAGTCTC
TTTATCGCAC TCGCCTCGGG TTCATTTAGC TATAGCTATT ACTCAGGTTA TGTCCTGTGC
ATGACACTCT TGGTGGCCAC CATTAATGGT TATGCATTCC GTTTTCTCTG GCCTAATTGG
CCTGCGCTAC AGCAACTGAT GATCCCCGTG CTGTTACCTC TGGTGATGGC CTTTGCCTTA
ATGTTCACCG AAAAAATCCT ACAGCTGAAA TACTATAACC GCCGTATGTT ATTAATATGT
CGTTATAGTG CCGTTTATAT CCTCTTGATT GGATTATTAG TGCCTTTTAT CCGCTATGGC
ACCGCACTTT CTATCGAGAT TATCTCGGTA GCGATACTCA GCATCGTTAT GATGGTACTC
GCGGTGATTC AAGCCATTAA TGGTCAAAAA CTCGCGAAGC TCTATACCAT TGGCTGGGTC
AGTATGCTCA CGGGCGCGTG CCTCAGTAGC CTACTCTATT TGAGTGTTAT TGAACTCAAT
ATCAAGCCAC AGACACCAGT GATGTTCGGA CTCACTTTCG AGATCATCTT TATGTCACTA
GTACTCGCTA TTCGTTATAA CGATGAACGA AAATCCAAGC TACGCATTCA ACAGGAAGCG
CTAAAACAAG CACAAAAGAT CCGTAGTGCA CGCGAGGAAG CCTTGAAAGT GGAAGCCGAA
ACCAATGAAA GGCTCGAGCA GATGGTGCAA GAACGCACGC TAGAGCTTGA GATAACCCTG
CGCGAATTGC ATGAAGTTAA CCAAAAACTT ACCGAGCAGA GCACTATCGA TAGCTTAACC
GGAGTAAAAA ACCGCAGCGC CTTCGATAAA CGACTGCTCG CAGAGAGCCG GATTAGCCGT
CGCCAAGAAA CCCCTATTGC CTTATTAATG CTGGATATCG ACCGATTTAA ATCCATCAAC
GATCAATTCG GCCACCTAGC AGGGGATCAG GCATTAAAAG TGATAGCGAC AACCTTGCAG
CAACATTTAA AACGACCAAC CGATCTAGTA TCACGTTTTG GTGGTGAAGA GTTTGCTATT
ATTCTCCCCA ATACGACTGC GGATGGCGCT CTTCAAGTCG CTGAAAATAT AAGAGATGCA
GTGACCAGTA TCGGCCTAGC ATGGGAAGGC AAGCCCATTC CCTTGACCGT GAGTATCGGT
GTCAGTGCCG ACGTCATCAG TAACGACCAA CACAGTACCG AATTATTAGA GCAAGCCGAC
AAGGCGCTCT ATCAGGCAAA AAATAGCGGA CGCAATCAAG TTAAATTGTA TGCGCCAGCA
CAAACAGAAC CTACTTAG
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| Protein sequence | MTKFGGLLVL LLSMFISTGS FANTMSIDER TPTPLNLTPW LMVTHSNADG QLADIQAQPK
LEWHKFTNQD IQRLNQHSFW LRVNLTTGDE HLSRILALDN PLLDKVTLYH LVDNELINTS
YMGDTLLYKE RPLPSNIFLY PFKLNANEQH TFYLHIVTEG NAAVPLSLWS ANDLAQIAES
TAIEHGFQLG VLAAIGIFSL FIALASGSFS YSYYSGYVLC MTLLVATING YAFRFLWPNW
PALQQLMIPV LLPLVMAFAL MFTEKILQLK YYNRRMLLIC RYSAVYILLI GLLVPFIRYG
TALSIEIISV AILSIVMMVL AVIQAINGQK LAKLYTIGWV SMLTGACLSS LLYLSVIELN
IKPQTPVMFG LTFEIIFMSL VLAIRYNDER KSKLRIQQEA LKQAQKIRSA REEALKVEAE
TNERLEQMVQ ERTLELEITL RELHEVNQKL TEQSTIDSLT GVKNRSAFDK RLLAESRISR
RQETPIALLM LDIDRFKSIN DQFGHLAGDQ ALKVIATTLQ QHLKRPTDLV SRFGGEEFAI
ILPNTTADGA LQVAENIRDA VTSIGLAWEG KPIPLTVSIG VSADVISNDQ HSTELLEQAD
KALYQAKNSG RNQVKLYAPA QTEPT
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