| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3546 |
|---|
| Symbol | |
|---|
| ID | 4254111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4236766 |
|---|
| End bp | 4237806 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638120183 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_735668 |
|---|
| Protein GI | 113971875 |
|---|
| COG category | [C] Energy production and conversion
[G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1819] Glycosyl transferases, related to UDP-glucuronosyltransferase |
|---|
| TIGRFAM ID | [TIGR00661] conserved hypothetical protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.279975 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATAC TCTACGGAGT TCAAGGCACA GGGAATGGCC ACCTAAGTCG TGCTCGAGTG
ATGGCAAAAG CCTTAATTGA GCACAATATT CAAGTCGACT TTTTGTTTTC GGGGCGCAAG
CCTGAGCATT TTTTCGATAT GGAGTGTTTT GGGGAGTATC GCGTACAGGC GGGAATGACC
TTTGCGACTC ACTCAGGACG AGTGAATGTA TCGCAAACGG TGAGACAGAA TTGCTCCTTG
TCATTGCTTA AGGATATCCA AGCATTAGAT TTGAGTTGCT ATGACCTAGT GCTGAATGAT
TTTGAACCCG TATCCGCATG GGCGGCGAGG CGCCAAGGCG TCCCTTCCAT TGGCATAAGT
CATCAAGCGG CCTTGACTCA CCCAGTGCCT AAGTTGGGGA GCACTTGGTT TAATGAGTTG
CTACTCAACT ATTTTGCGCC AGTGGATGTG GCACTGGGTT GCCATTGGCA TCATTTTGGT
TTTCCGATCC TACCTCCCTT TGTCGAAGTC GATGCCAGTC CTATTGAACA TACCCATCAA
ATTTTGGTGT ATTTACCCTT CGAAGAGGCG GATGCGATCG CCGAATTTTT TAAGCCTTTT
ACGGATTATC AGTTTTTGGT GTATCACGCT AAGCAGCCGA CAGCACCGCT CGCCGACCAT
ATTCAATGGC ATGGTTTTAA TCGTGACGGA TTTAAACAGC ACTTAGCGAG CTGCGGTGGA
GTGATTGGTA ATGCCGGATT TGAGTTGGCG AGCGAGGCGC TGACCTTAGG TAAGAAGTTG
TTGGTCAAGC CGCTGATTGG TCAATTCGAG CAGTTGTCGA ACGTGGCAGC GCTGCAATTA
TTGGGCGCGG GTGACAGTAT GATGAGTCTA GACATGGGCG TGGTCAAACG TTGGCTCAAG
GCAGCATCGC CAAGTCCCAT CGCCTATCCA CAGGTGGGTG ATGCCTTAGT GAAATGGATT
TGCAGCGGTC AGTGGCAACA TACCGCGCCA TTGTGTGATG ACCTTTGGAG CCAAGTGAAG
CTACCCGACA CCTGGCGCTA A
|
|---|
| Protein sequence | MRILYGVQGT GNGHLSRARV MAKALIEHNI QVDFLFSGRK PEHFFDMECF GEYRVQAGMT
FATHSGRVNV SQTVRQNCSL SLLKDIQALD LSCYDLVLND FEPVSAWAAR RQGVPSIGIS
HQAALTHPVP KLGSTWFNEL LLNYFAPVDV ALGCHWHHFG FPILPPFVEV DASPIEHTHQ
ILVYLPFEEA DAIAEFFKPF TDYQFLVYHA KQPTAPLADH IQWHGFNRDG FKQHLASCGG
VIGNAGFELA SEALTLGKKL LVKPLIGQFE QLSNVAALQL LGAGDSMMSL DMGVVKRWLK
AASPSPIAYP QVGDALVKWI CSGQWQHTAP LCDDLWSQVK LPDTWR
|
|---|
| |