Gene Shewmr4_3534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3534 
Symbol 
ID4254099 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4222490 
End bp4223545 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content52% 
IMG OID638120171 
Producthypothetical protein 
Protein accessionYP_735656 
Protein GI113971863 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAA ATTATCAACC GAGCGATAAA GCGCAGCGTC CAACGGATGA CAGCGGCATA 
GGGGTAAAAT ATGCCGCAGC TAAACGGGGC GGCTTTAAGG GGCGCTGGTA CTTGTTATTA
GCCTTGGTGA TTACGCCCGT CGCTGTGGTC GGCTGGATAT TGCTGCGTCC CCATTTGTTT
ATTTTGGCCA GTGGCATAGT GACGACCGAG CCCTTAGAAG TACGCGCCCC CAGTGCGGGG
GATGTTGCCG CTGTCAAGGT GAAGCGGGGC GATGTGCTTG CCAGTGGAAC ACATATTCTG
ACCTTAGTCG ATGCGCAGTT AGGGGCACAA ATCCATGAGT TAGAGAAGCA ATTGTCTCAG
CTTGAACTCA ACAATCTCAG CCTTAATGCC GAAATCCTCA CGCAATTACA GCAGCGTATC
GATGTGGCGG CTGAAGGGGT CACGCGGCAG AATGGGCTGC TCGACAGTTT TGAGCGTTAC
CAGCGAAAAG GGGTTGTCCC CACTGCGGAT ATGGCGGCAG TGTTGCAGGC GCACACGGCT
TCAAAGATGG CACTCGAACA GGCCAAAGTC GATTTAATGC AGGCGCGTCA AGCGCAGAAG
ACCGAGTTGC TTGCGGGGCC TATTGCTCAA TCAAAATACA ATGTCGAGCT GCAGCTCGCC
CGATTAAAAG CACAGGAATC GCAATTAGAT ATTAAGGCGC TTACCCCGAC TCGGGTCGTT
GATGTATTAG TGCAAGCGGG TGAGCATATC GTCGAAGACA GGCCCTTAGT CTTACTCTCG
GGTCGTGAGG CGGCGGTGAT CTTTGCCTAC CTTGAACCTA AGTACTTGGA ATATACCGCC
ATAGGCCAAG AGGCGACCAT TAAATTACCC AATGGCACTC GGCTAAGGGG TGAGATTTCG
GAACCAACCG AGTTAGTGGG GCGCTTGCCT AAGCAATTGT CGGGTCCATT CGATGGAGAA
AAGCCCGTAT TGAAAATAAC CTTGAAGCCG GAAACTGCTT TGCCCACGTC GATTGAAGGC
GTGCCGGTTG AAGTCAGTTT TGATTATCTT TGGTAG
 
Protein sequence
MKVNYQPSDK AQRPTDDSGI GVKYAAAKRG GFKGRWYLLL ALVITPVAVV GWILLRPHLF 
ILASGIVTTE PLEVRAPSAG DVAAVKVKRG DVLASGTHIL TLVDAQLGAQ IHELEKQLSQ
LELNNLSLNA EILTQLQQRI DVAAEGVTRQ NGLLDSFERY QRKGVVPTAD MAAVLQAHTA
SKMALEQAKV DLMQARQAQK TELLAGPIAQ SKYNVELQLA RLKAQESQLD IKALTPTRVV
DVLVQAGEHI VEDRPLVLLS GREAAVIFAY LEPKYLEYTA IGQEATIKLP NGTRLRGEIS
EPTELVGRLP KQLSGPFDGE KPVLKITLKP ETALPTSIEG VPVEVSFDYL W