Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3516 |
Symbol | |
ID | 4254082 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4204015 |
End bp | 4205838 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120154 |
Product | histidine kinase |
Protein accession | YP_735639 |
Protein GI | 113971846 |
COG category | [P] Inorganic ion transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.295368 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAAAAGG CGAGCGCAAT GGGGTTGTGG TGTCGGGCAA TACTCGTGAG TGTTATCTTG AGTCTGACAG GGCTTACCCT GTGCTATGCC GATGAAGATG TGTCCGTCAA TGAATTTAAG GTGGGTGTGC TGGCCAATCA TGGTGTGTTG CAAGCTAAAC AACGCTGGCA GCCAATGATG GATTACCTGA GCGAAAAAGT CCCCAATAGC CGTTTTGAAG TGGTGCCGGT GGATTTTAAT GGCATGCGTA GCCAGTTACT TAGCCACGAC TTGCAATTTA TTGTGACCAA CCCCGGCCAG TATCTGCATT TGAGTAATAA CTTTCCGCTC TCGTGGCTGG CGACCATGAA GAGCCGTAAA CATCAAGGCA GCACTTTTAC CATAGGCGCG ACCATTATTG TGCGTGCCGA TAGCCCAATC CGCAGTTTGC AGGATTTACG GGGCAAGAAT GTGGTTGCCA GCGATCCGCA GGCGCTCGGT GGCTATCAAG CGGCGATGGG ACTGCTGCAT AAAATGGGCT ATTTGCCGGA GCAGTTTTTC GGTGATGTGC GATTCTTAGG CTTTCCCCTC GAGCCGCTAA TCTATCAAGT GCGCGATGGT AATGCCGATG CTGCGATTGC GCCTTTTTGC ACCTTAGAGG AAATGATTGA AACCGGGCTT ATCAATCAAG CCGATTATCG GGTTATTCAT CCAACCAATC CTCCTGGTTA TGACTGCGAG GTGAGCACCC AGCTTTATCC TAATTGGTCA TTCGCGGCCG CAGATACAGT ATCGCCGCGT ATTACCATGC AAATTACTCG CGCCCTGTTT GACTTGCCCG CCGACCATGT GGCGGCGATT ACCGCCGATA CCTTAGGTTG GACAGCGCCG GTGAGTCAGC TCAAGGTGAT TGAATTATTT AAAGAATTAC AGCTGCAAGG CGCAGCCCCT CCTCTCTATC AAACCGTCTA TAAATGGATG GAGAAAAATA AAGAGTGGGG TGGGGTATTG CTGCTGATCT TTATCGTATC GACCATTTAT CACCTGTGGC TCGAATATAA ATTTCGCCAA AAGAGCGAGT TTTTGGTCAG CACCGAGCGG CAGTTAAAGG ATAAAGCCTT GCAGCTAGAG CGGTTGCAGA GTGCGGCGAT TCTCGGGGAG ATTGGCGCGG GGCTTGCCCA TGAATTAAAT CAACCTATTG CCGCCATAAC CCAATACAGT GAAGGCGCCA TGCTACAGCT AGAAAGGCTG GGGCAGGATA ATCCTGAACT CTATGATATT TTAGGGAAAA TCAACGCGCA ATCGATACGA GCAGGGGCGG TTGTGCACCG CATTCGCGGT TTACTCAAAC GTCGCCAGTC TAAGGCCGAA CCGCTCAATG TGACCCTAGT CGTCAAAGAA GCCTTAGCCC TGCTGCGGCG CGAGTTAGAC CGCGCAGGTG TGCAAGTTAC TGTATTGGTC GAAGGTCATC CCTTTGAAGT CTTGGGGGAT AGCGTGGGCC TCAGTCAAAT GTGGGTCAAC CTAGTCAAAA ATAGTTTAGA TGCGCTAGAA GCCTGTGAAG ATCACCGAAC GCGCCAGTTG AGGGTGGAGA TCTATTATCA ACCCACTGAA ATTAAAGTAT TAGTGATTGA TAATGGTGAA GGATTGCAAC GCCAAGCCAG TGAGCTAATG GCCTCATTTG CCTCCACCAA GGATGCGGGA CTCGGTTTAG GTTTAGCCAT TTGTAAGGAT GTCGTCAGCC GCCACCATGG CAGTATTGAG ATTGAAAACT GCAAGCAATC GGTACATGCC CAATTACCCT GGCAGCAAGG CTGTGTGGTA ACCGTGGTAT TGCCCAGCCA ATAA
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Protein sequence | MEKASAMGLW CRAILVSVIL SLTGLTLCYA DEDVSVNEFK VGVLANHGVL QAKQRWQPMM DYLSEKVPNS RFEVVPVDFN GMRSQLLSHD LQFIVTNPGQ YLHLSNNFPL SWLATMKSRK HQGSTFTIGA TIIVRADSPI RSLQDLRGKN VVASDPQALG GYQAAMGLLH KMGYLPEQFF GDVRFLGFPL EPLIYQVRDG NADAAIAPFC TLEEMIETGL INQADYRVIH PTNPPGYDCE VSTQLYPNWS FAAADTVSPR ITMQITRALF DLPADHVAAI TADTLGWTAP VSQLKVIELF KELQLQGAAP PLYQTVYKWM EKNKEWGGVL LLIFIVSTIY HLWLEYKFRQ KSEFLVSTER QLKDKALQLE RLQSAAILGE IGAGLAHELN QPIAAITQYS EGAMLQLERL GQDNPELYDI LGKINAQSIR AGAVVHRIRG LLKRRQSKAE PLNVTLVVKE ALALLRRELD RAGVQVTVLV EGHPFEVLGD SVGLSQMWVN LVKNSLDALE ACEDHRTRQL RVEIYYQPTE IKVLVIDNGE GLQRQASELM ASFASTKDAG LGLGLAICKD VVSRHHGSIE IENCKQSVHA QLPWQQGCVV TVVLPSQ
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