Gene Shewmr4_3500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3500 
Symbol 
ID4254066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4186469 
End bp4187002 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content47% 
IMG OID638120138 
Productalkylhydroperoxidase 
Protein accessionYP_735623 
Protein GI113971830 
COG category[S] Function unknown 
COG ID[COG2128] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGTA TTACTCCAGT ATCAAACCCA CAAGGTGAAG CTGCAACAAC CCTTAATGCC 
ATTAAACAAA AAATTGGCAT GGTGCCGAAT CTGTATGCGA CTGTCGCGCA TTCACCAACG
GTACTGAATG CTTACCTAGC ATTCAGCGAA GCGCTAAACC AAGGTCGTTT GTCTGCTAAA
CAACGTGAAC TGATTGCTCT GGCGGTTGGT CAGGCTAACG AATGCCAATA TTGCCTGTCT
GCTCATACCA TGATTAGCCG CGGCGCAGGT CTTTCTGATG AGCAAATCAT TACTGCGCGT
CAGGGAACGG CAGAAAATAC ACTAGACAAT GCTTTGGTGA AGCTGGCCGT TACCCTAGTA
AAACAACGTG GCGTGATCAC CGATGAACAG CTGTCTGACG CACGTACACA TGGCGTTGAT
GAAGGTTTAG TATTTGAAGT ATTAGCACAA GTGAGTGCCA ATACTTTCAC TAACTACGCC
AACCATGTGG CTGATACCGA CATCGACTTT CCAAAAGTGA ATGTGCAGCT CTAA
 
Protein sequence
MSRITPVSNP QGEAATTLNA IKQKIGMVPN LYATVAHSPT VLNAYLAFSE ALNQGRLSAK 
QRELIALAVG QANECQYCLS AHTMISRGAG LSDEQIITAR QGTAENTLDN ALVKLAVTLV
KQRGVITDEQ LSDARTHGVD EGLVFEVLAQ VSANTFTNYA NHVADTDIDF PKVNVQL