Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3500 |
Symbol | |
ID | 4254066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4186469 |
End bp | 4187002 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638120138 |
Product | alkylhydroperoxidase |
Protein accession | YP_735623 |
Protein GI | 113971830 |
COG category | [S] Function unknown |
COG ID | [COG2128] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain [TIGR01926] uncharacterized peroxidase-related enzyme |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGTA TTACTCCAGT ATCAAACCCA CAAGGTGAAG CTGCAACAAC CCTTAATGCC ATTAAACAAA AAATTGGCAT GGTGCCGAAT CTGTATGCGA CTGTCGCGCA TTCACCAACG GTACTGAATG CTTACCTAGC ATTCAGCGAA GCGCTAAACC AAGGTCGTTT GTCTGCTAAA CAACGTGAAC TGATTGCTCT GGCGGTTGGT CAGGCTAACG AATGCCAATA TTGCCTGTCT GCTCATACCA TGATTAGCCG CGGCGCAGGT CTTTCTGATG AGCAAATCAT TACTGCGCGT CAGGGAACGG CAGAAAATAC ACTAGACAAT GCTTTGGTGA AGCTGGCCGT TACCCTAGTA AAACAACGTG GCGTGATCAC CGATGAACAG CTGTCTGACG CACGTACACA TGGCGTTGAT GAAGGTTTAG TATTTGAAGT ATTAGCACAA GTGAGTGCCA ATACTTTCAC TAACTACGCC AACCATGTGG CTGATACCGA CATCGACTTT CCAAAAGTGA ATGTGCAGCT CTAA
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Protein sequence | MSRITPVSNP QGEAATTLNA IKQKIGMVPN LYATVAHSPT VLNAYLAFSE ALNQGRLSAK QRELIALAVG QANECQYCLS AHTMISRGAG LSDEQIITAR QGTAENTLDN ALVKLAVTLV KQRGVITDEQ LSDARTHGVD EGLVFEVLAQ VSANTFTNYA NHVADTDIDF PKVNVQL
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