| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3475 |
|---|
| Symbol | |
|---|
| ID | 4254041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4160155 |
|---|
| End bp | 4161018 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638120113 |
|---|
| Product | methylation site containing protein |
|---|
| Protein accession | YP_735598 |
|---|
| Protein GI | 113971805 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00218559 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTCTT TATCCGCAAA GCGCATGGCG CGCTCCAAAC GGGGTTTTAC CTTAGTCGAA
ATGGTCACTG TGATCCTTAT CTTAGGCATT CTGGTGGTGG GCGTGAGTAG CTTTATTATT
TTCGGCACGC GGATTTTTGT GGAGTCGAGC TCGGTCGATC AAGTGCTAAG CCAGAGCCGT
TTCGCTGTCG AGCGTATGAC CCGTGAGCTG CGCAGCGCCT TGCCTAACAG TGTGCGGCTC
AATGGTAATG GCTTAACCTA TCAGTGCGTT GAATTTGTCC CCATTGAGGC GAGCACCACT
TATTTATCGA TGCCGATTGC GCCGAGTGCC GCAGCCTTAA CGGGAACAGT AATTCTCAAT
GCGACCGATA ACATTAAGGA CAACCAATAT ATTTGGATTT ATCCTTTGAC TGATAGCGAT
GTCTATAACA GCGCCAGACA AAAACGGGCA CAGATTAAGA CTTTTACTCC CCTAGGTGAG
TCGCCTAATC CGGCTAATCA AGTCACTCTT ACCTTTATGG CATCAACACG CTTTGCCGAA
GCATCACCGC GGCAGCGGAT CTATTTTGGT TCGAGTCCTG TGAGTTATTG TTTTGAAAAA
TCGTCATCCA GCAATGAGTT AATCTTAAAG CGTTATACTG GTTATGGGTT GAATGTTAGC
CAACCCACGC CTAGCAGCAT GAGTGCTGGG GTGTTAATGG CGCAGAATGT GGCCAATGCA
TTGAACGACA GTGCCGATTT ACCGCTGATA TTAACGCCAT CGAGTTTAGT CAATAATGCT
ATGGTGCATT TACAACCGCG ATTTAATGTC AACGGCGAGA CATTTCAATA TCGACATCAA
GTACAGGTGA TTAATGTCCC CTAA
|
|---|
| Protein sequence | MRSLSAKRMA RSKRGFTLVE MVTVILILGI LVVGVSSFII FGTRIFVESS SVDQVLSQSR
FAVERMTREL RSALPNSVRL NGNGLTYQCV EFVPIEASTT YLSMPIAPSA AALTGTVILN
ATDNIKDNQY IWIYPLTDSD VYNSARQKRA QIKTFTPLGE SPNPANQVTL TFMASTRFAE
ASPRQRIYFG SSPVSYCFEK SSSSNELILK RYTGYGLNVS QPTPSSMSAG VLMAQNVANA
LNDSADLPLI LTPSSLVNNA MVHLQPRFNV NGETFQYRHQ VQVINVP
|
|---|
| |