| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3444 |
|---|
| Symbol | |
|---|
| ID | 4254010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4116058 |
|---|
| End bp | 4118352 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120082 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_735567 |
|---|
| Protein GI | 113971774 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGTAA CCATGATTGA GCTTAATAGG CGAACCTTTT TAAAGGGCGC AGGGGCCAGC
GGTGCAACAT GTGCATTGGC TAGCCTGTTG CCGGGCAGCT TAGCGGCATT AGAGAGCAAG
CAGCTAAAGG GAATGGGCAA AGACATTGCC AGTATCTGTG AGATGTGTTC GACTCGCTGC
CCGATTTCGG CGCGGGTGAT TGAGGGCAAA AATGTCTTTA TCAGTGGCAA TAAGGCGGCC
AAATCCTTTG GTGGTAAAGT CTGTGCCCGG GGTGGTGCTG GCCATAGTTT ACTTTACGAT
CCACAGCGGA TTGTGAAGCC GCTCAAACGG GTGGGTGAGC GCGGCGAGGG TAAGTGGGCC
GAGATCTCTT GGGATGAAGC CTATCAACTG ATTGCCGATA ATCTTAATAA AATCAAACAA
GCTTATGGCC CTGAAGCTGT GGCGTTTTCC TCTAAGTCCG GTTCGCAAGA AAAACATTTA
TTCCATCTCG CCACCGCCTT TGGCAGCCCG AATACCTTTA CTCATGCTTC AACTTGCCCC
GGTGGTTACG AAATTGCCGC TAAGGCCATG TTTGGCACTA AGGTGAAGCG CGATTTAAGC
AACTCCAAAT ACATCATTAA CTTCGGCCAT AACCTGTACG AAGGCATCAA CATGTCCGAA
ACCCGCGGCA TGATGGCGGC GCAAATGGAT AAAGGCGCCA AGCTAGTGGT GTTCGAGCCA
AGATTCTCCA TCGTCGCCGA CAAAGCCGAT GAATGGTATG CGATCCGCCC CGGCACCGAT
GTGGCGGTGG CTTTAGCGCT TTGCCATGTA TTGATTGAAG ATAATCTCTA CGACAAGGCC
TTTATCGAGC GTTATGTGGA AGGGTTTGAT GCCTTCGCCG CCGAAGTCAA AGCCTACACC
CCTGAGTGGG CCGAAACCGT TTCCGATGTG CCCGCCAAAG ATATTCGCCG TATCGCCCAC
GAATATGCGG CCAAGGCGCC CCATGCTGTG GTGGATTTTG GTCACAGAGC CACCTTTACC
ACCGAAGAGT TTGAAATGCG CCGCGCCTTG TACGCTGCCA ATATTTTGAT TGGTAATATC
GAGCGTAAGG GCGGTATCTA CCTAGGTCAA AAGCCTAGCG ACTATAACAA ACTGGCGGGA
GAAAGCGTGG CGCCAGTATT AGGTAAGCCT GGCGTAAAAG ATATGCCAAA GCCTGCGGCG
AAACGTATCG ACCAAGTGGA AGAGCAGTAC GCCATGATGT GGTCATCGGG CGGGATTTAT
CAAACGATTC TCGATGCGAC CTTAACTGCC GTGCCCTATC AGTTACACGG CTGGGTAATG
TCTCGCACCA ACCCCATGCA AACGATGACC GACAGGGCGC GTGTGGTTGA AGCCTTGAAA
AAGCTCGACT TTGTAGCGGT TTGCGATGTG TATATCAGTG AAACTGCCGC CTATGCCGAC
GTGATTTTAC CCGAGTCGAC TTACCTTGAG CGTGATGAGG AAATCGCCGA CAAGTCGGGT
AAAAATCCCG CCTACTATGT GCGCCAACGC GTGGTGGAAA CCTTGGGCGA CACTAAGCCC
TCATGGCAAA TCTTTAAGGA CATTGGCCAT AAGCTAGGGC TAAGTGAATT CTACCCTTGG
GATAACATGG AAACCCTGCA ACTGCTGCAG GTGAATCGCG ATACCGCACT GCTACGCCGC
ATCAAGGATG AAGGTTTTGT CAGCTTTGGT AAGCCCATCA TGCTGCGCGA ACCTAAGATG
GTGGCCGAGT TTACTAAGGC CTACGCTAAT GCCAAAGCCG TGGATGAAGA CGGCACCTAC
GGCAGTTTGC TCAGCTTTAA AACCCCAAGT GGCAAGATTG AATTGACCTC AGCCAAGGTC
GAGGCCATGG CGCCTGGACG CGGGGTGATT AAGTTCCGCG AAGTGCATTT GAAGAAAGCC
GACGAGCTGT ACTTTATCCA AGGCAAGGTC GCCGTGCATA CCAATGGTGC GACTCACAAT
ATCCCCATGT TAGCTAACCT GATGTCGGAT AACGCCATTT GGGTGCATCC GGTCACGGCG
GGCAAGTTAG GGATCAGCAA TGGCGACCCG ATTCGGTTAA CCAGCAGCGT GGGTAGCGAA
GAAGGCCACG CCTTAGTCAC CCCGGGCATT CGCCCCGATA CCGTGTTTGC CTATATGGGC
TTTGGCTCTA AAAACAAAGA GTTGGTTAGA GCGACTGGTA AAGGCATCCA CTGCGGAAAC
TTATTGCCCC ATCAAACAGC CCCTGTGTGT GGCATGAATA TTCATACGAC AGGCGTCACG
CTGGCAAAAC GCTAA
|
|---|
| Protein sequence | MEVTMIELNR RTFLKGAGAS GATCALASLL PGSLAALESK QLKGMGKDIA SICEMCSTRC
PISARVIEGK NVFISGNKAA KSFGGKVCAR GGAGHSLLYD PQRIVKPLKR VGERGEGKWA
EISWDEAYQL IADNLNKIKQ AYGPEAVAFS SKSGSQEKHL FHLATAFGSP NTFTHASTCP
GGYEIAAKAM FGTKVKRDLS NSKYIINFGH NLYEGINMSE TRGMMAAQMD KGAKLVVFEP
RFSIVADKAD EWYAIRPGTD VAVALALCHV LIEDNLYDKA FIERYVEGFD AFAAEVKAYT
PEWAETVSDV PAKDIRRIAH EYAAKAPHAV VDFGHRATFT TEEFEMRRAL YAANILIGNI
ERKGGIYLGQ KPSDYNKLAG ESVAPVLGKP GVKDMPKPAA KRIDQVEEQY AMMWSSGGIY
QTILDATLTA VPYQLHGWVM SRTNPMQTMT DRARVVEALK KLDFVAVCDV YISETAAYAD
VILPESTYLE RDEEIADKSG KNPAYYVRQR VVETLGDTKP SWQIFKDIGH KLGLSEFYPW
DNMETLQLLQ VNRDTALLRR IKDEGFVSFG KPIMLREPKM VAEFTKAYAN AKAVDEDGTY
GSLLSFKTPS GKIELTSAKV EAMAPGRGVI KFREVHLKKA DELYFIQGKV AVHTNGATHN
IPMLANLMSD NAIWVHPVTA GKLGISNGDP IRLTSSVGSE EGHALVTPGI RPDTVFAYMG
FGSKNKELVR ATGKGIHCGN LLPHQTAPVC GMNIHTTGVT LAKR
|
|---|
| |