Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3402 |
Symbol | |
ID | 4253968 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4061041 |
End bp | 4064130 |
Gene Length | 3090 bp |
Protein Length | 1029 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638120040 |
Product | acriflavin resistance protein |
Protein accession | YP_735525 |
Protein GI | 113971732 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.33342 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00241288 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATATTG CAGAGTATTC TATCCGCCAC AAAGTCATCA GTTGGATGTT TGTATTGCTG CTACTTGTCG GTGGTGGCGT GAGTTTTACG GGTCTTGGAC AATTAGAATT TCCCGAATTT ACCATTAAAG AAGCCCTAGT GATCACCGCC TATCCAGGTG CGTCACCGGA GCAAGTGGAA GAAGAAGTTA CCCTTCCCCT CGAAGATGCC TTGCAACAAC TCGATGCGGT GAAACATGTC ACCTCAATCA ACAGTGCGGG CCTGTCGCAG ATCCAAATTG AGATTAAAGA AAATTACGAT AAAACCAGCC TGCCTCAGGT ATGGGATGAA GTGCGTCGTA AGGTCAACGA CACCGCAGGG CAATTGCCTC CCGGTACCAG TACGCCCAAG GTATTTGACG ACTTTGGCGA TGTCTACGGC ATTTTATTTA ACCTGTCAGG CCCCGATTAT AGCAACCGCG AATTAAGCAA TTATGCGGAC TATTTACGCC GCGAAATCGT GCTGGTACCC GGCGTGAAAA AAGTCTCAGT GGCGGGCAGC GTCACCGAGC AAGTTGTGAT TGAAATTTCC CAACAAAGAC TCTCGGCACT GGGACTAGAC CAAAGCTATA TCTACGGCTT GATCAACAAC CAAAACGTAG TCTCCAATGC AGGCAGTTTA GTGGTTGGCG ATAATCGCAT TCGTATCCAT CCCACCGGGG AATTTAGCAG TGTGCAGGAT CTGGCGCGTC TGATCGTCAG CCCGCCCGGT AGCACCGAAC TTATCTATCT TGGTGACATT GCCAATATAG AAAAAGATTA CGATGAAACC CCGGATGTGC TCTATCACAA CCGTGGCGAG ACGGCTTTAT CACTGGGGAT TTCCTTCTCT AGCGGTGTTA ACGTGGTTGA AGTCGGTAAA AGTGTGAGTC AGCGCCTTGC CGAGCTGGAG TCACAGCGCC CGATTGGAAT GAACCTAGAC ACGGTTTATA ACCAGAGCCT GGCGGTAGAT GACACTGTTA ACGGCTTTTT AATCAACCTA TTAGAATCCA TCGCCATCGT TATTGCCGTA CTCCTGCTGT TTATGGGTTT ACGCTCAGGT TTATTGATGG GCTTAATCCT GCTGCTCACC ATTCTCGGCA CCTTTATCGT GATGAAAGTG CTGGGTATTG AGCTGCAACT TATCTCCCTC GGCGCATTGA TTATCGCCCT AGGTATGCTG GTCGATAACG CCATTGTAGT GACAGAAGGC ATTTTGATTG GCCTGCGTCG TGGTAAGACT CGCCTCGAAG CCGCCAAGCA AATTGTGTCG CAAACCCAAT GGCCACTGCT TGGCGCCACC GTTATCGCGA TTATCGCCTT TGCGCCAATT GGTTTATCAC AAAATGCCGC GGGAGAATTT TGTCGTTCAC TGTTCCAAGT GTTAATGATC TCTTTATTTA TCAGTTGGAT TACCGCAATC ACCCTAACGC CCTTCTTCTG CCATTTGCTG TTTAAAGATG CGCCAGCCGA TGATGAAGAA GAACAGGATC CCTACAAGGG TTGGTTCTTT AGCCTATACC GCGTGAGTTT GACCTTTGCC CTACGTTTTA GACTCGCCAG CATTGTATTG GTCGGCGTCA TGCTCGTTAG CGCCGTGATT GGCTTTGGTC ATATCAAAAA TGTGTTCTTC CCCGCGTCGA ATACACCAAT CTTCTTTGTG GATATTTGGA TGCCCGAAGG CACTGATATC AAAGGTACCG AGCGTTTTAC CGCCGATATT GAAAAGCTGT TACTCAAGCA AGCCGAGGAG CAACACAGCG GCCTAAAACA CTTAACCTCA GTGATCGGTC AAGGTGCGCA GCGCTTTATC CTGCCCTATC AACCCGAAAA GGGTTATCCA GCCTATGCGC AGCTGATTAT CGAGATGGAG GATCTAGCGT CGCTCAAAGT CTATATGCCA GAGTTAGAAA CCCTGTTAAA TCAACGATTC CCACAGGCGC AATATCGATT CAAGAATATG GAAAACGGCC CTTCTCCGGC CGCGAAGATT GAAGCACGCT TCTACGGCGA TGATCCTGAG GTGCTGCGTG CGCTGGGCGC ACAGGCCGAA GCTATCTTCA ATGCAGAGCC GAGTATGGAC GGTATTCGCC ATGACTGGCG CAATCAAGTG CCCTTGATCC GCCCGCAACT GGAAAACGCC CAAGCGAGGG AGACAGGGAT CAGTAAGCAA GATCTGGATA ATGCGCTGCT GATTAACTTT AGCGGTAAAC AAATCGGGCT TTACCGTGAA ACCAGTCATT TGCTGCCCAT AGTTGCGCGC GCTCCAGCCG AAGAGCGTTT ACAGGCGGAC AGCCTGTGGA AGCTGCAAAT TTGGAGCACC GAGCACAATA CCTTTGTGCC AGCCACACAA GTGGTCAGTC AGTTTGAGAC CCAGTGGGAA AATCCATTGG TAAAACGTCG CGACCGGATG CGGATGTTAG CGGTACTGGC CGATCCTAAG CTTGGCAGCG ATGAAACCGC CGATTCTGTA CTACACAAAG TAAAAGATAA GGTTGAAGCC ATCAGCTTGC CAACGGGCTA CCACTTAGAG TGGGGCGGCG AGTATGAGAC AGCAGGTGAA GCGCAAACGG CGGTATTTAG CTCGATTCCT ATGGGTTATT TAGTGATGTT TTTAATCACA GTATTCCTAT TTAACTCTGT GCGTCAGCCC TTAGTGATTT GGTTTACCGT GCCACTCGCC TTGATTGGGG TGTCAGCCGG ACTCCTGTTA TTCGATGCTC CCTTTAGCTT TATGGCGCTG CTGGGCCTAC TGAGTCTCTC GGGCATGGTG ATTAAAAATG GCATTGTGTT GGTCGATCAG ATCAACCTAG AGCTCGGTGA AGGTAAACCC GCCTACGCCG CCCTTGTCGA TTCGAGCGTG AGTCGTGTGC GCCCAGTGTT AATGGCGGCG ATCACCACAA TGCTCGGGAT GATACCGCTG ATCCCCGATG CCTTTTTCGG CTCCATGGCG ATCACTATCA TCTTTGGTTT AGGTTTTGCC TCATTGCTGA CGCTTATCGT GCTGCCAGTG ATGTACAGCT TAGCCTTCAA TATCAAACCG AATGCAGTAG CTGGTGCAGT CAACAACTAG
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Protein sequence | MNIAEYSIRH KVISWMFVLL LLVGGGVSFT GLGQLEFPEF TIKEALVITA YPGASPEQVE EEVTLPLEDA LQQLDAVKHV TSINSAGLSQ IQIEIKENYD KTSLPQVWDE VRRKVNDTAG QLPPGTSTPK VFDDFGDVYG ILFNLSGPDY SNRELSNYAD YLRREIVLVP GVKKVSVAGS VTEQVVIEIS QQRLSALGLD QSYIYGLINN QNVVSNAGSL VVGDNRIRIH PTGEFSSVQD LARLIVSPPG STELIYLGDI ANIEKDYDET PDVLYHNRGE TALSLGISFS SGVNVVEVGK SVSQRLAELE SQRPIGMNLD TVYNQSLAVD DTVNGFLINL LESIAIVIAV LLLFMGLRSG LLMGLILLLT ILGTFIVMKV LGIELQLISL GALIIALGML VDNAIVVTEG ILIGLRRGKT RLEAAKQIVS QTQWPLLGAT VIAIIAFAPI GLSQNAAGEF CRSLFQVLMI SLFISWITAI TLTPFFCHLL FKDAPADDEE EQDPYKGWFF SLYRVSLTFA LRFRLASIVL VGVMLVSAVI GFGHIKNVFF PASNTPIFFV DIWMPEGTDI KGTERFTADI EKLLLKQAEE QHSGLKHLTS VIGQGAQRFI LPYQPEKGYP AYAQLIIEME DLASLKVYMP ELETLLNQRF PQAQYRFKNM ENGPSPAAKI EARFYGDDPE VLRALGAQAE AIFNAEPSMD GIRHDWRNQV PLIRPQLENA QARETGISKQ DLDNALLINF SGKQIGLYRE TSHLLPIVAR APAEERLQAD SLWKLQIWST EHNTFVPATQ VVSQFETQWE NPLVKRRDRM RMLAVLADPK LGSDETADSV LHKVKDKVEA ISLPTGYHLE WGGEYETAGE AQTAVFSSIP MGYLVMFLIT VFLFNSVRQP LVIWFTVPLA LIGVSAGLLL FDAPFSFMAL LGLLSLSGMV IKNGIVLVDQ INLELGEGKP AYAALVDSSV SRVRPVLMAA ITTMLGMIPL IPDAFFGSMA ITIIFGLGFA SLLTLIVLPV MYSLAFNIKP NAVAGAVNN
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