| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3401 |
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| Symbol | |
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| ID | 4253967 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4059955 |
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| End bp | 4061037 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120039 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_735524 |
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| Protein GI | 113971731 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.392528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00103818 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATCAT ATCGACTTCT TCCCTTAGCG GCGTTGTTGC CCGCCCTACT GACTGCCTGC
ACTCCCGCGG AAAGTTCAGT ACAGGCAACC GCCATTCGCC CCGTCAAACT CTTTGAGGTG
GTGCAACTCG AAGGAGGAGA TTTTAGGACG TTTCCCGCTC GCGTCAGTGC CAATAGTCGC
GCCGAATTGT CCTTTAGGAT TTCAGGAGAA CTGACTGATT TGGCCCTAGT GGAAGGGCAG
CAAATCCGCC AAGGTAGCCT ACTGGCCAAA CTGGACGACA GGGATGCCCA TAATAATTTA
ATGACCCGCG AAGCCGAGCA TGAACTCTTG GCGGCGGATT TTCAGCGTAA AACCGAGCTA
CTCAAGCGCA AGCTAATCTC TCAAGCCGAG TTTGATAGCA CCCAGGCACA GCTCAAATCG
GCAAAAGCCG CATTGGCCGC CGCCCGTGAC CAATTAAGCT ATACCAAGCT GATTGCTCCC
TTTAGTGGCA CAGTGGCAAA ACGTTTAGTG GACAACCACC AAATCGTACA GGCCAACCAA
GGGATTTTAA CGCTGCAAAA CAACAACCTG CTCGATGTTA GCATTCAAGT CCCCGAGGCG
ATGGCCGCCA GCTTAAATAC CTATGTGCAG CAGCAAAACT TTACCGCTAA GGTGCGTTTT
AGCGCATTAG CGGGAATGGA GTTTGATGCG AAATTCAAGG AATACTCAAC TCAAGTCACC
CCTGGCACTC AAGCCTATGA AGTGGTGTTC TCCTTACCTC AACCTAAAGA TATTCAACTA
CTTCCGGGGA TGAGCGCCGA GTTAACCCTA GCCTTAGTTA AAACACCAGT TCAAACCGCT
TCGGCCATAG TGCCAGTTAC TGCCATTGAT AAACGCGATC AAGACGGCCA AGTTCAAGTG
TGGGTGTATC AGTCTCAGTC GGGCGAAATC AAACCCACAG CGGTCACCTT AGGTCGTGTC
ACCAGTCAAG GTATCGAAGT ATTAGGCGGC ATCAACAAGG GCGATTTAAT TGTGAGTGCG
GGTGTATCCC AATTAGCCGA CGGAATGAAA GTGAAGCCAC TACGCTGGCA ACGCGGAGTG
TAA
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| Protein sequence | MKSYRLLPLA ALLPALLTAC TPAESSVQAT AIRPVKLFEV VQLEGGDFRT FPARVSANSR
AELSFRISGE LTDLALVEGQ QIRQGSLLAK LDDRDAHNNL MTREAEHELL AADFQRKTEL
LKRKLISQAE FDSTQAQLKS AKAALAAARD QLSYTKLIAP FSGTVAKRLV DNHQIVQANQ
GILTLQNNNL LDVSIQVPEA MAASLNTYVQ QQNFTAKVRF SALAGMEFDA KFKEYSTQVT
PGTQAYEVVF SLPQPKDIQL LPGMSAELTL ALVKTPVQTA SAIVPVTAID KRDQDGQVQV
WVYQSQSGEI KPTAVTLGRV TSQGIEVLGG INKGDLIVSA GVSQLADGMK VKPLRWQRGV
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