| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3399 |
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| Symbol | |
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| ID | 4253965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4057387 |
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| End bp | 4058745 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120037 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_735522 |
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| Protein GI | 113971729 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00107141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAAGACA GACACGGGCT GCTTAGCGCG CCAATTGGTC GTGTACTGCT CAACATGAGC
CTCCCTAACT TGATTGGCAT TATGACCATT CTCGGGTTTA GCCTCGCTGA CACTTTTTTT
ATCAGCCAAT TAGGGACAGA AGCCTTAGCG GCGATCAGTT TTACCTTCCC TGTCACTTTG
ATTATTTCCA GCATTGCCAT TGGCATTGGT GCCGGGGTAT CCACGAATCT TGGCCGATTG
ATTGGCTCGG GTAACGCCAC GCGGGCCAAG GTGTTTTTAC ACGATGCGCT GCTGCTGACC
TTTATCCTGA TCGCCAGTTT ATCCGCCCTC GGCAGTATTT TTATCACACC ACTTTTTAGC
TTGCTCGGCG CCAATGACAC CAGTCTGCCG CTCATTCATG ACTATATGAT GTATTGGTAT
GTGGGCGCGC CGCTGTTGGT GTTATTGATG GTAGGCAACC AAGGCTTACG CTCAACCGGG
GATACTCGCT CACCCGCAAT GATTATGACG CTGGCGGCGA TTATTAACTT GATCCTCGAC
CCTTTGCTTA TTTTCGGTAT TGGGCCTTTT CCACGCTTAG AGATCCAAGG AGCGGCGATT
GCCACCCTGT TCTCGTGGCT TATTGCCCTG TCACTCTCGG GCTATTTGCT GATTATTAAG
CGCCGAATGC TTGAACGGGC CGCATTTGAT ATCGATAGAA TGCGCGCTAA CTGGAGCAAA
CTCGCCCATA TCGCCCAGCC AGCGGCCCTG ATGAATTTAA TTAATCCACT CGCCAATGCG
GTGATTATGG CGATGCTGGC CCATATCGAC CACAGCGCCG TTGCCGCCTT TGGTGCGGGC
ACGCGCTTAG AATCCGTTCT CTTGATTGTG GTGATGGCGC TCTCCTCGAG CCTAATGCCG
TTTATCGCGC AAAATCTTGG TGCTGGCCAA ACCCAAAGGG CGAAACAGGC TTTGCTGTTA
TCGCTTAAAT TTATCTTAGT ATTCCAGACC TTACTCTATA TTCCGCTGGC GTTTTTCGCC
CAGCCACTGG CGAGTTTATT CAGTACCGAT CCACAGGTGT TAGAGTGGTT AAGCTTCTAT
ATTCTGGTGC TGCCCTGCGC TTACGGCCCC TTAGGCATAG TGATTATCTT TGCCACGGCG
CTCAATGCGT ACCACAGACC CATGAGCTCG CTAGTGATTA ACCTGTGCCG TTTAGTGCTG
CTGATGCTGC CGCTGGCGGC GCTGGGATCT TATATCGATG GCGTGAAAGG CTTATTGCTC
GCACTCCCCA TCACCAACCT CTTGATGGGG ATTGCCTGTT ATTATCTAGC CCAAAGGATT
TGTGAACCTA CCAAGGTCAC GACCGCCGAT GCTATCTAA
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| Protein sequence | MQDRHGLLSA PIGRVLLNMS LPNLIGIMTI LGFSLADTFF ISQLGTEALA AISFTFPVTL
IISSIAIGIG AGVSTNLGRL IGSGNATRAK VFLHDALLLT FILIASLSAL GSIFITPLFS
LLGANDTSLP LIHDYMMYWY VGAPLLVLLM VGNQGLRSTG DTRSPAMIMT LAAIINLILD
PLLIFGIGPF PRLEIQGAAI ATLFSWLIAL SLSGYLLIIK RRMLERAAFD IDRMRANWSK
LAHIAQPAAL MNLINPLANA VIMAMLAHID HSAVAAFGAG TRLESVLLIV VMALSSSLMP
FIAQNLGAGQ TQRAKQALLL SLKFILVFQT LLYIPLAFFA QPLASLFSTD PQVLEWLSFY
ILVLPCAYGP LGIVIIFATA LNAYHRPMSS LVINLCRLVL LMLPLAALGS YIDGVKGLLL
ALPITNLLMG IACYYLAQRI CEPTKVTTAD AI
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