| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3393 |
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| Symbol | |
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| ID | 4253959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4048160 |
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| End bp | 4051807 |
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| Gene Length | 3648 bp |
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| Protein Length | 1215 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638120031 |
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| Product | putative outer membrane adhesin like protein |
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| Protein accession | YP_735516 |
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| Protein GI | 113971723 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01965] VCBS repeat
[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0139307 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATACAGG AAAATAAACT AAGCAAGGTC GCTATCTGTG TAGGATTCGC TTTAACATCC
AGTTCAGCTA TGGCTGCAAA CAGTTGGTTA TCACGTGTAA ACACCGTTAC TGAACAGCAA
GAAAAATCCA TTGTTTCTGC TAATCATATG CAAGCTGTTT CAGCAATGAG TTCTGATTCG
TCGAATGCTG TTTTCGATAT TACTGTATCT TTGTACAATA ATCCCAAAGG TAATGAGCAG
AAAGCTTACG AAGAAATCTT AGGTTATTTT GCCGATGGTG TATGTGAGCA ATCGAATGGT
GAGCATAAGC TCGGAAAGAT AAGTATCTTC AGAGAAAATA AGCATAGATC TAAGTCGGAT
ATTATTTGGG GCGATCGTGA ATGGCCGCGC GCTAATACAG CGGGTTTTGG CGCCAATGGT
ATGCATATTT GGTTTGGTGA TGTGTTCCCT AATGGGGCGG GACAAGGTAA AGACCACAAC
ATGCTTACCG ATCCCCTCGG AGCTGGCTAT ACCTTAGCAC ATGAGTGGGG ACATTATGCC
TACGGTGTAT ATGATGAATA TAAAGGTAAT GCTGTCTCTG GGGCGGCAAA TGCCACGCTT
ACCACTGACG TAGCCACAGA TTCCATTATG AGTAATCAAT GGCAAGCGAG AAATGGTGAT
ATGAAATGGT TGAATCATTC AACCGCGAAC AATATTGGTG ATGTTAACCG TACCGCACAG
GGTCGAGTGT ATGGAAAGAG TGCTTGGGAA GTGCTAACCC AGGACGTGAA AGATGACCCT
AAATCTGGTC GCAAAACAGC CCAGCCTACT CGCACTCGAT ACACCACGTT AGCGAATAAT
GCACCCGATG CTAGCAACCC TGTCAAAACT GAGTTACCCG CGGCTCAGTC TAGCTGTCGT
GATCAGCTGA AGTTTGTGTG GGTGGAAGGT GATATCGATA TGCAGATCGT GATGGACAGA
TCGGGTAGCA TGTATGGTTC GCCGATTAAT AACGCAATTC AAGCCGCGAA AACACTTGTA
GATGCTACCG CAGAAGGCAG TACTGCGATG GGGTTGGTTT CTTTCTCCAG TCGCTCAAGC
GTGAAGCAAG ATTTTGCCGT GCAACAAATA CCTAAGCCGG ATACTGGTAT CAAACAAGCT
CTGAAAGCTG CAATTGACAA TATCTATGCC AGCGGTTCAA CTGCACTATT CGATGGTAGC
TCTCTTGCTC TTGATAATTT AATTACTTAC CAGACCGCGG CAGCAAGTGG TGCTCCTGGT
GTTGTTTTTG TGCTAGCGGA TGGCGATGAT AATAGTTCTA TAAAAAATGA ATCTACAGTC
ATCACTGCCT ATCAAAATGC GAATGTCCCA ATCTTTAGTT TCGGCTATGG TTCAGCTTCG
CCTACAGGTC CTTTAGTGAC TATGGCGAAT GCTACAGGTG GGAAATACTT TTCTTCACCC
ACGACACTCT CGGAAATTAT CGATGCTTTC TTACAAGCAA ATGCCATTGC TACTGATAAT
CAAAACTTAG TGTCATCAAC GGTTAATGTG GCAAATGATG CAAGCGCCAC TCAGGAGATT
CATATTGACT CTGGTTTAGA TAATGTGAAT ATTTTCGTAA ACCACAAAGG TAGCGCCTCA
GATCTACAAC TCACGCTAAA AGACGCCTCT GGAAATAACG TTGCTGGCGT GTCGTTTGAT
TGCGTGACTG TAACAGGCGG ACAGTCTTGT AATGTCAATG TGCCTAATAG CGTTATTGCT
TCGCTCGGTC ATGGTGAATG GCAACTTGAG TTGACTAATA CAAATGTCAA TCGTCCACTG
GATGCGACCG TCAATGTGAG TGCAGAACCT AGTCTTGCGG GGAGTTATAC CGTATCAGTT
GAGGGCTTTG CAGGTAATGC CGTTACTTAT CCGAGCCCGA TGATTTTAAC GACGGCGTTA
ACCAAAGATA AACTGATCAC TGGGGCTAAC GTCCTTGCGA CCATCAAGGA TCCGATGGGC
AACACGACGA ATTTGGAAAT GTTTGATAAT GGACAAGGAG GTGATGCGGT CGCTGGTGAC
GGTATTTACT CTGCAGTTGC GCCATACAAT CAGAATGGTA TTTACCAAGT TGAAGTGAAT
GTTGATAACA AGGATAGCAA GGCGAGATAT ACTGCCACAG GCTTGTTTAC ACCAACATTG
GACGGCTCTG AGCCAGTGCA AGAAGCTTTA CCAACCATTA CGGAAAACTT TGTACGTATC
GCGAAAACCT CATTAGTTGT TAGCGACGTG CCTTATTATG ACGGTGATGA CAGTCATTAT
ATTGCGACTA AACTCGAGAC GACGAATGCT GGTATCAATG GTGTGATCGA TAGTGCTGGC
GACCTTGATT TCTATGTCTT AGAAAACATC GATATGAGTA AAGATCTCGT GGTGCGTGTG
ACTGATGCTA GCTTAGGTAT GAAGCCTAAG TTAACTGTGT ACAAACCAGA TGCGTCTACG
GCAATAGTGG ATAATGTCAC CCTAGCAACA AATCCATCCG CGACAAATTA TGTGTTCTCA
AAGTTAGCTA AGTCTGAACT GGAATCGACT CTGTATGTTG TTGTTAGCCA TGAAGATGAC
ACTGCTGCTA CGGGGGGATA TCAAGTCAGT GCGGGTGAAC CGTTAAACAC TGACGTTCCG
CCGAACAATG TGCCAGTAGC CAACTCGGAT GCTATGACCA TTTGGGCTGG CCAAAAAGTG
ACAATTTCAC CTTTGGCAAA TGATACGGAT GCAGATGGTG ATACTTTAGT GATCGATAGC
GTTACTACTG GAGCTACTAA GGGGGCTGTT GCGGTTTCGG GCAATGTTAT CAGTTATGAC
TCAGGTAGTG CCTTTGCAAA TGAAACGCCA GGCTCAACCG TATTAGATAG CTTTGCTTAC
ATCATTACCG ATAACAAAGG TGGCTTTGCT GAAGCTACAG TTGATGTCAG TGTTAAAATT
AATACACCGC CAACAGCTAC GCCTGATGCT ATCAGTGTCA ATGAGAATGC GACTGTTACA
ATATCGCCGT TAACGAATGA CACCGATGCC GACGGCCATA CTTTTACCCT CTCGGCTAAA
CAAGCTAGTT TGAAAGGTAA GCTGACAGAT AATGGCGATG GTACGTTTAT CTACGATCCT
AACGGCCAGT TTAATGATTT GGTCAAAGGT GAAACGGCCA ATGAAGTATT TAGTTACACC
ATCACAGATG AAATTGGCGC GACAAGCACA ACTGAAGTGA CTATTAGTGT TGTTGGTATT
AATGCGGCTC CTGTTGCTGT CGCTGACACA GCGGTAACGA CTAAGTCAGG GAGCATACAA
ATTGACTTAC TTGCAAATGA CACCGATGCA GATGGAGACA CGCTTACTAT CACAGCTATT
GATGTTGGCT CTTTGAAGGG CAAGGTCACC AATAATAATG ATGGTACTGT AACTTACAGC
CCTAATGGAC AGTTTGGTCA CTTATATCAG GGGCAATCTG CAACAGAGAC TTTTACTTAT
ACTATCTCTG ATGGGGATGC TGAAATGACA GCCTCTGTTA CGGTAACTAT TAATGGCGAA
GGCCAAGCGC CAGTAGAACC CGAAAAAGAA GGTTCATCAG GTGGTAGCTT GTCGTGGTTT
GTATTACTAC TAGCCCCATT AGCATTCATG CGTCGTCGTG TGAAATAA
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| Protein sequence | MIQENKLSKV AICVGFALTS SSAMAANSWL SRVNTVTEQQ EKSIVSANHM QAVSAMSSDS
SNAVFDITVS LYNNPKGNEQ KAYEEILGYF ADGVCEQSNG EHKLGKISIF RENKHRSKSD
IIWGDREWPR ANTAGFGANG MHIWFGDVFP NGAGQGKDHN MLTDPLGAGY TLAHEWGHYA
YGVYDEYKGN AVSGAANATL TTDVATDSIM SNQWQARNGD MKWLNHSTAN NIGDVNRTAQ
GRVYGKSAWE VLTQDVKDDP KSGRKTAQPT RTRYTTLANN APDASNPVKT ELPAAQSSCR
DQLKFVWVEG DIDMQIVMDR SGSMYGSPIN NAIQAAKTLV DATAEGSTAM GLVSFSSRSS
VKQDFAVQQI PKPDTGIKQA LKAAIDNIYA SGSTALFDGS SLALDNLITY QTAAASGAPG
VVFVLADGDD NSSIKNESTV ITAYQNANVP IFSFGYGSAS PTGPLVTMAN ATGGKYFSSP
TTLSEIIDAF LQANAIATDN QNLVSSTVNV ANDASATQEI HIDSGLDNVN IFVNHKGSAS
DLQLTLKDAS GNNVAGVSFD CVTVTGGQSC NVNVPNSVIA SLGHGEWQLE LTNTNVNRPL
DATVNVSAEP SLAGSYTVSV EGFAGNAVTY PSPMILTTAL TKDKLITGAN VLATIKDPMG
NTTNLEMFDN GQGGDAVAGD GIYSAVAPYN QNGIYQVEVN VDNKDSKARY TATGLFTPTL
DGSEPVQEAL PTITENFVRI AKTSLVVSDV PYYDGDDSHY IATKLETTNA GINGVIDSAG
DLDFYVLENI DMSKDLVVRV TDASLGMKPK LTVYKPDAST AIVDNVTLAT NPSATNYVFS
KLAKSELEST LYVVVSHEDD TAATGGYQVS AGEPLNTDVP PNNVPVANSD AMTIWAGQKV
TISPLANDTD ADGDTLVIDS VTTGATKGAV AVSGNVISYD SGSAFANETP GSTVLDSFAY
IITDNKGGFA EATVDVSVKI NTPPTATPDA ISVNENATVT ISPLTNDTDA DGHTFTLSAK
QASLKGKLTD NGDGTFIYDP NGQFNDLVKG ETANEVFSYT ITDEIGATST TEVTISVVGI
NAAPVAVADT AVTTKSGSIQ IDLLANDTDA DGDTLTITAI DVGSLKGKVT NNNDGTVTYS
PNGQFGHLYQ GQSATETFTY TISDGDAEMT ASVTVTINGE GQAPVEPEKE GSSGGSLSWF
VLLLAPLAFM RRRVK
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