| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3315 |
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| Symbol | |
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| ID | 4253881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3957194 |
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| End bp | 3958564 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119953 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_735438 |
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| Protein GI | 113971645 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAAAT CAGCTAAAAC CCTGCAACAA CGCATGGGCA TTGTAGCCCT CACTTGGCCG
ATTTTTATCG AAACCTTGCT GCAGTCCTTA CTCGGGATCA GCGATATTTT TATGCTGAGC
CATTATTCCG ATAATGCCGT CGCCGCAGTG GGGCTCACCA CCCAATTGAT GTTTTTTATG
ATGGTGATGT CCATGATGGT CAGCACGGGC GCCAGCATTC TGATCAGCCA AAATAATGGT
GCGGGGCAGA CGCAGCAAGC AACCGATATT GGTGTCGCCA GTGTGGCCTT AAGTTTAGGC
TTAGCCGTGA TTATGGGGGC ATCGATGTTT TTCGGTGCCC ACGGCATTAT CGGTTTGTTT
GCCCTAGAGC CAGAGGTCGC AGGCTATGGT TATGACTATC TGCTGATCTG CGGCAGTTTA
AGTATTGGGC TGGTGATGAA CATCGCCTTT GCCGCCATCT TACGTAGCTA CGGTTTTACC
CGCTCGGCCA TGTTAGTCAC CTCCAGCACG GGATTGATGA ATGTGCTCGG TAACTATATT
GCCCTCTATT CTCCCTTTGG TTTGCCGGTT TATGGAGTGA CTGGGGTGGC GATTTCGACT
GTAACCAGCC AGATTATCGG TGCCTTGATT ATGCTGGCTG TGATCCACCG TAAAGGTATC
CCGCTGCCGA TGCCAAGGTT GAAGTTATTG CCGCGCAGTA CCTATTGGAG TGTGATGCGC
ATAGGTTTGC TCAATGCGGG CGAAATGCTG TCCTACAACG TGGCACAGAT GACCATCATC
TATTTTATTA GTCAGATGGG CACACTCTCG TTGACCGCCT ATACCTATGG TTTGAATATC
AGCCGCTTTA TTTACTGTTT TGCGGTGGCG CTTGGGCAGG CATCGCAAAT TCAAACCGGT
TACTACGTCG GTAAACAATG GTTCGATGAG ATTACTGTGC GGGTGCAAAA ATATTGCCTT
GTGGGCTTTA TTGCTTCCCT CGCCATAGTG TTAACCTTTT ATTGGCAGCG TTTTACCATA
GTGGGCTGGC TGAGTGAAAA CCCTGAGGTC ATTCAACTTA CCGCACTCCT GCTATTGGGT
TCCATTGCGC TGGAAACCGG CCGAGTCTTT AATCTGGTAA TTATTTCGGC ATTAAAAGGC
GCGGGGGATG TGGCGTTTCC GGTGCGCGTG GGCCTGTTTA GCATGTGGGG AATTGGCGTG
CTATTGGCTT GGTTCTTTGG GCTGCATTTA GGTTATGGCG TGCTGGCCGC TTGGCTTGCT
GTTGCGGCCG ATGAATGGGT GCGAGGCTTG ATTATGGTGC ACCGTTGGCG CTCGGGTCGC
TGGCAGCGTT TTACCCGTAT TCCGCCAGCA ACGCCTGTTT CATCACGTTA A
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| Protein sequence | MAKSAKTLQQ RMGIVALTWP IFIETLLQSL LGISDIFMLS HYSDNAVAAV GLTTQLMFFM
MVMSMMVSTG ASILISQNNG AGQTQQATDI GVASVALSLG LAVIMGASMF FGAHGIIGLF
ALEPEVAGYG YDYLLICGSL SIGLVMNIAF AAILRSYGFT RSAMLVTSST GLMNVLGNYI
ALYSPFGLPV YGVTGVAIST VTSQIIGALI MLAVIHRKGI PLPMPRLKLL PRSTYWSVMR
IGLLNAGEML SYNVAQMTII YFISQMGTLS LTAYTYGLNI SRFIYCFAVA LGQASQIQTG
YYVGKQWFDE ITVRVQKYCL VGFIASLAIV LTFYWQRFTI VGWLSENPEV IQLTALLLLG
SIALETGRVF NLVIISALKG AGDVAFPVRV GLFSMWGIGV LLAWFFGLHL GYGVLAAWLA
VAADEWVRGL IMVHRWRSGR WQRFTRIPPA TPVSSR
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