| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3307 |
|---|
| Symbol | |
|---|
| ID | 4253874 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3949383 |
|---|
| End bp | 3950294 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638119946 |
|---|
| Product | ribokinase |
|---|
| Protein accession | YP_735431 |
|---|
| Protein GI | 113971638 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0524] Sugar kinases, ribokinase family |
|---|
| TIGRFAM ID | [TIGR02152] ribokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACA TACTCGTTAT AGGCAGTGCC AACGCCGACC ATGTTATGAA TTTTGAGTAT
TTGCCCGCAC CGGGGCAGAC CTTAATGAGT CGAAGCTACC GACTAGAGCA TGGTGGTAAA
GGGGCGAATC AAGCGGTGGC CTGTGCCCGC TTATGTCAGG CCGATTCTCG AGTGGATTTT
ATTTGCCATT TGGGCCAAGA CAGCGTGGGT AACGAGATGC GCGAAAACTG GCTCAAGGAT
GGAATAGAAG CCGATGGCAT TACCCAAGTC GCCAATCTGA GTACAGGTAC GGCGATGATT
TTTGTCGCCG ATAATGGCGA AAACTCCATC GGCATCGCCG CTGGCGCCAA TGCTAATCTC
ACGCCACCAG AGCTTGAGAA ACATTACGCT CTGTTTGTAA ATGCCCAGTA CATGCTGATC
CAACTCGAAA CGCCAATGGA GACAGTAAAC CACGCATTGC AAACCGCCAA ACGCCTTGGC
ATTACCACAG TGCTCAACCC CGCCCCTGCT GTCAGCCAAG AACTGGATTA TCTCAAGTGG
GTGGACATTA TCACCCCGAA TGAAACCGAG GCCGAAGCGT TAACGGGCAT TGAGGTCAAT
AACGAAGATG ATGCCAAACT GGCCGCCCAA CTGCTGCATC AACAGGGCGT GACGACTGTG
GTGATTACCT TAGGCAGTAA AGGCGCATTT ATCAGTAGCG CAGGCTTTAC CGGATTAATT
CCTGCACTTG AAGTACAAGC CATAGACACA GTTGCCGCTG GCGATACCTT CAATGGCGCC
TTAGTGGTGG GCTTAAGTGA GGGCATGTCG ATTGCCGCCG CCGTCGGCTT TGCCAACGCC
GCATCCGCTA TCACTGTGAC CCGCGCCGGC GCTCAGCGCG CCATTCCCTA CCGCCACGAA
CTGCCGCGTT AA
|
|---|
| Protein sequence | MSHILVIGSA NADHVMNFEY LPAPGQTLMS RSYRLEHGGK GANQAVACAR LCQADSRVDF
ICHLGQDSVG NEMRENWLKD GIEADGITQV ANLSTGTAMI FVADNGENSI GIAAGANANL
TPPELEKHYA LFVNAQYMLI QLETPMETVN HALQTAKRLG ITTVLNPAPA VSQELDYLKW
VDIITPNETE AEALTGIEVN NEDDAKLAAQ LLHQQGVTTV VITLGSKGAF ISSAGFTGLI
PALEVQAIDT VAAGDTFNGA LVVGLSEGMS IAAAVGFANA ASAITVTRAG AQRAIPYRHE
LPR
|
|---|
| |