| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3287 |
|---|
| Symbol | |
|---|
| ID | 4253854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3924698 |
|---|
| End bp | 3926404 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638119926 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_735411 |
|---|
| Protein GI | 113971618 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAG TAACTGAAGT TTCCATTGCC GAGCTGCGTG ACGCACTCGA ATCCGGCCGC
ACAACTGCGG TTGAGTTGGT GAAATCCTAT TTGGCTCGAG TGGCGGCTTA CGATGGCCCT
GCCACTGAGA CTAAGTTGAA TGCGTTAGTG GTGCACAATC CCGATGCGCT CAAAGAAGCC
GAGGCTTCCG ATGCGCGCCG TGCCCGCGGC GAAACCTTAA GCCCACTCGA TGGTATTCCT
TACACCGCTA AGGACAGCTA TTTAGTGAAG GGACTGACGG CGGCGTCTGG CAGCCCAGCA
TTTAAAGATT TAGTGGCCCA GTACGATGCC TTTGCCGTCG AGCGCCTACG CGCCGCGGGT
GCTATTTGCT TAGGCAAAAC CAATATGCCA CCCATGGCGA ATGGCGGCAT GCAGCGTGGT
CACTATGGCC GCGCCGAAAG CCCCTACAAT GCGAATTATC TGACTGCGCC CTTTGCCTCG
GGTTCTTCCA ACGGTGCTGG CACTGGAACC GCGGCAAGCT ACTCGGCGTT CGGTCTTGCC
GAAGAGACTT GGTCGAGTGG CCGTGGCCCT GCATCCAACA ACGGTTTGTG TGCCTATACA
CCGTCTCGCG GCGTGATTTC GGTGCGCGGC AACTGGCCAT TAACCCCAAC TATGGACGTG
GTCGTGCCTT ATACCCGCAC TATGGCGGAT ATGCTCGAAG TGCTGGATGT GATTGTGGCC
GATGACCCTA TTACCCGTGG CGATCTCTGG CGCCTACAAC CTTGGGTTCA AATCCCTAAA
GCTTCTAGCG TTCGCCCAGA ATCCTATCTG GCGCTTGCCG CCAGCGCCGA CACCCTTAAG
GGTAAACGTT TTGGCGTACC ACGCATGTAC ATCAACAAAG ATGAACTTGC AGGAACCAGC
GAAAACCCAG GTATCGGTGG ACCAACGGGA CAACGTATCC ATACTCGCCA ATCGGTTATC
GATTTGTGGG AAGCGGCGCG TAAAGCCCTA GAAGCTGCAG GTGCGGAAGT GATTGAAGTC
GATTTTCCGC TGGTGTCTAA CTGTGAAGGC GACCGCCCTG GCGCGCCGAC CGTGTTTAAC
CGTGGCATAG TCACGCCACA ATTCCTCCAT GATGAATTAT GGGAATTGTC GGGTTGGGCG
TTCGATGAGT TCCTGCGGGC GAACAACGAC CCTAAACTCA ACAAGCTTGA AGATGTGGTG
GGGCATTTGA TATTCCCCCA TGACCTCGGC ACCTTGCCAA ACCGTGAGGG TGATTTAGCT
GCTGGCATGG AAGAGTATGT CAACATGGCC AAACGCGGCC TGAAATCCTA TGACCAGATC
GACAGTATTC CCGATGGTCT GCGTGGTTTA GAGAAGACCC GTAAGCTGGA TCTCGAAGAC
TGGATGGACG GACTTAAGCT TGATGCCGTG CTGTTCCCAA CCGTGGCCGA TGTCGGCCCC
GCCGATGCCC ATGTGAATCC GGCCTCAGCC GATATCGCTT GGAGCAACGG GGTTTGGGTA
GCAAACGGTA ACCTTGCGAT TCGCCATTTA GGCGTGCCGA CTGTGACAGT GCCTATGGGC
GTAATGGCCG ATATTGGCAT GCCAGTGGGA TTAACCTTCG CGGGCCGTGC CTACGATGAT
AACAATCTGC TGAAGTTTGC CGGCGCGTTC GAGTCGACGG GCAATAAGCG TATGGTTCCG
CCGCGTACAC CGCCGCTGAG TCAATAA
|
|---|
| Protein sequence | MFEVTEVSIA ELRDALESGR TTAVELVKSY LARVAAYDGP ATETKLNALV VHNPDALKEA
EASDARRARG ETLSPLDGIP YTAKDSYLVK GLTAASGSPA FKDLVAQYDA FAVERLRAAG
AICLGKTNMP PMANGGMQRG HYGRAESPYN ANYLTAPFAS GSSNGAGTGT AASYSAFGLA
EETWSSGRGP ASNNGLCAYT PSRGVISVRG NWPLTPTMDV VVPYTRTMAD MLEVLDVIVA
DDPITRGDLW RLQPWVQIPK ASSVRPESYL ALAASADTLK GKRFGVPRMY INKDELAGTS
ENPGIGGPTG QRIHTRQSVI DLWEAARKAL EAAGAEVIEV DFPLVSNCEG DRPGAPTVFN
RGIVTPQFLH DELWELSGWA FDEFLRANND PKLNKLEDVV GHLIFPHDLG TLPNREGDLA
AGMEEYVNMA KRGLKSYDQI DSIPDGLRGL EKTRKLDLED WMDGLKLDAV LFPTVADVGP
ADAHVNPASA DIAWSNGVWV ANGNLAIRHL GVPTVTVPMG VMADIGMPVG LTFAGRAYDD
NNLLKFAGAF ESTGNKRMVP PRTPPLSQ
|
|---|
| |