Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3282 |
Symbol | |
ID | 4253849 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3915510 |
End bp | 3917786 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638119921 |
Product | TonB-dependent receptor |
Protein accession | YP_735406 |
Protein GI | 113971613 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.166859 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACAGA ATACTATCAA AATGAGTTGC ATTGCTTTAG CTATCTCATC TGCATTGGCA GCACAATATG CTGTTGCCGA GGATGAAAAT AGCACCGGGG AGAAGCAAGC CACCTTAGAA CGCATTGAAG TCACCGCTCG TAAGTCCATT GAGAGCCTGC AAAACGTACC AGTTGCAGTG ACCTCGGTCA GTGCTGACGA TTTGGCGGAA AATGGCATCA GCGTGATGAC TGAAATCCAG CAATTTTCAC CCAACACCAC GCTGCAATCC AGTCGCGGCA CTAACTCTAC CCTCACGGCC TTTATTCGCG GTGTCGGCCA GGAAGATCCG CTCTGGGGCT ATGAGCCTGG CGTCGGTATC TATATCGACG ATGTGTATAT CGCCCGCCCA CAGGGCGCGG TGCTCGATAT CCTCGATGTA CAACGTATCG AAGTACTACG CGGCCCTCAG GGCACCCTCT ATGGTAAAAA TACCATCGGC GGCGCGGTCA AATACGTGAC CAAGAAGATG AGCGGGGACG CTGAGTTAAA CCTCAATGCC ACCATCGGCA GCTACAACCA GCAAGACTAC AAGATAGCAG GTCAATTACC TTTAATTGAT AACAAACTGT ATATTGGTGG CGCCTTCGCA AGCTTAAACC GCGATGGTTA TGGTGAATTT CTAACCTCAG CAGTACCTGG TCAAGATACT GAAAACTATA ACAAAGATGT TATGGCAGGT CGTCTGAGCT TAGAATATAC GCCAACCGAC AACCTGTTTA TGCGCCTCAA CTACGACAAA ACCACAGATG AGTCGAATTC CAAGGGCGGC TACCGTATGC TTCCCAGTGT CCTGACCGAT GCCCCTGTGC CAGACAGCAA ATACGACTCT TACACCAGTA TGCCAACCTG GAACAAAGTA GAAACCGAAG GTTGGGGGCT GACGATTGAA TACGGCTTGA ACGATGACTG GACGCTAAAA TCCGTGACCT CATCCCGTGA GAGCTATTCG CCCACCAACA TCGACTTTGA CAACACGAGT CTACGCATTT TCGATGTGCC CGCAATCTAC GATGACGAGC AATTCAGTCA GGAATTCCAA GCTAACTACG ACGGCGATGA TTTGAAACTC GTATCAGGCC TTTATTACTT TAAAGGCGAT TCCTGCGGGG TGTTCGATGC CATCCTATAT GAATATTATA AAGCTTACGG TGGTCTCACT CGTGAAGTTC GTGGTTGCAA CAACAGTGAA AGCTATGCCG CCTACGCTCA AGGCACTTAC GACATCACAG ATAAATTGTC GATGACCGCC GGTCTGCGTT ATACCCGCGA AACCAAGGAT GCAACTGTCT ATAACGGCGT CATGTTTACT ACGCTTTACC CCGAAACGGG CTGGATCCCA GGATATGTTC GCGATGAAGA TGCCATCAAC GCCAGTATTC CTAAGGTGTT AGATGATGAA GAAACTTGGT CGAAACTCAA TCCACGCTTA GGCTTAGAGT ATCAACTCAG CGACGATATG ATGCTGTTTA CCAGTTACTC ACAGGGCTTT AAATCTGGGA CTTTCAATCC TCGTGCAAGC TTTGCTGAGC CAGCGGTCGA TCCAGAAGTG GTTGATTCCT ATGAACTGGG TATGAAGAGT GAATGGTTTG ACAGGCTGCG TGTTAACGCA ACCGCCTTCT ACTTAGACCA TAAAGACAGA CAGTTCGTGA CCGTATTACC CGGTGAAAAC GCGTCCGATC TTAACCAACG TCTAGGCAAC ATTGGTAAAT CGACGGCCAC GGGTCTGGAA CTCGAAGTGG AATACGCCGC GACTGAGTCA TTGAATCTGT TCGCGACTCT GGGCTTAATC GATGCTAGCT TCGAGGAAGT GATCTCCTAC GATGACGATG GAAACCGCAT CGATATCAGC GACACTTATA CTATCACCAA CACCCCAGAT ACTACGGCAA ACGTTGGATT TAGCTACAAT ATCGATACGG ATATCGGCAG CTTTGTAGCC AACGGTAACT ACTACTATCG CAGCGACTAC GACTTAGCCG TAGTAGATAA CCTCTTGAGC CAAGATGGTT ATGGCCTGCT GAACCTCGGC TTAAACTGGT ACAGCAACGA CGGTCACTGG CACGCGGGTC TGCATTGGAA AAACGTCACT AACGAAGAAT ATCTGGTCGG TAACTATGCC TTCGTGACCC CAGATGGTAA TGGCGGATAT ACTCCAGGTT TAGGCGGTGA CAATACATTA ATTGGTTATT ATGGCGATCC AGAGACTATC TCTCTCACCG TTGGCTATAA TTTCTAG
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Protein sequence | MKQNTIKMSC IALAISSALA AQYAVAEDEN STGEKQATLE RIEVTARKSI ESLQNVPVAV TSVSADDLAE NGISVMTEIQ QFSPNTTLQS SRGTNSTLTA FIRGVGQEDP LWGYEPGVGI YIDDVYIARP QGAVLDILDV QRIEVLRGPQ GTLYGKNTIG GAVKYVTKKM SGDAELNLNA TIGSYNQQDY KIAGQLPLID NKLYIGGAFA SLNRDGYGEF LTSAVPGQDT ENYNKDVMAG RLSLEYTPTD NLFMRLNYDK TTDESNSKGG YRMLPSVLTD APVPDSKYDS YTSMPTWNKV ETEGWGLTIE YGLNDDWTLK SVTSSRESYS PTNIDFDNTS LRIFDVPAIY DDEQFSQEFQ ANYDGDDLKL VSGLYYFKGD SCGVFDAILY EYYKAYGGLT REVRGCNNSE SYAAYAQGTY DITDKLSMTA GLRYTRETKD ATVYNGVMFT TLYPETGWIP GYVRDEDAIN ASIPKVLDDE ETWSKLNPRL GLEYQLSDDM MLFTSYSQGF KSGTFNPRAS FAEPAVDPEV VDSYELGMKS EWFDRLRVNA TAFYLDHKDR QFVTVLPGEN ASDLNQRLGN IGKSTATGLE LEVEYAATES LNLFATLGLI DASFEEVISY DDDGNRIDIS DTYTITNTPD TTANVGFSYN IDTDIGSFVA NGNYYYRSDY DLAVVDNLLS QDGYGLLNLG LNWYSNDGHW HAGLHWKNVT NEEYLVGNYA FVTPDGNGGY TPGLGGDNTL IGYYGDPETI SLTVGYNF
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