| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3282 |
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| Symbol | |
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| ID | 4253849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3915510 |
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| End bp | 3917786 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119921 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_735406 |
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| Protein GI | 113971613 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.166859 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAGA ATACTATCAA AATGAGTTGC ATTGCTTTAG CTATCTCATC TGCATTGGCA
GCACAATATG CTGTTGCCGA GGATGAAAAT AGCACCGGGG AGAAGCAAGC CACCTTAGAA
CGCATTGAAG TCACCGCTCG TAAGTCCATT GAGAGCCTGC AAAACGTACC AGTTGCAGTG
ACCTCGGTCA GTGCTGACGA TTTGGCGGAA AATGGCATCA GCGTGATGAC TGAAATCCAG
CAATTTTCAC CCAACACCAC GCTGCAATCC AGTCGCGGCA CTAACTCTAC CCTCACGGCC
TTTATTCGCG GTGTCGGCCA GGAAGATCCG CTCTGGGGCT ATGAGCCTGG CGTCGGTATC
TATATCGACG ATGTGTATAT CGCCCGCCCA CAGGGCGCGG TGCTCGATAT CCTCGATGTA
CAACGTATCG AAGTACTACG CGGCCCTCAG GGCACCCTCT ATGGTAAAAA TACCATCGGC
GGCGCGGTCA AATACGTGAC CAAGAAGATG AGCGGGGACG CTGAGTTAAA CCTCAATGCC
ACCATCGGCA GCTACAACCA GCAAGACTAC AAGATAGCAG GTCAATTACC TTTAATTGAT
AACAAACTGT ATATTGGTGG CGCCTTCGCA AGCTTAAACC GCGATGGTTA TGGTGAATTT
CTAACCTCAG CAGTACCTGG TCAAGATACT GAAAACTATA ACAAAGATGT TATGGCAGGT
CGTCTGAGCT TAGAATATAC GCCAACCGAC AACCTGTTTA TGCGCCTCAA CTACGACAAA
ACCACAGATG AGTCGAATTC CAAGGGCGGC TACCGTATGC TTCCCAGTGT CCTGACCGAT
GCCCCTGTGC CAGACAGCAA ATACGACTCT TACACCAGTA TGCCAACCTG GAACAAAGTA
GAAACCGAAG GTTGGGGGCT GACGATTGAA TACGGCTTGA ACGATGACTG GACGCTAAAA
TCCGTGACCT CATCCCGTGA GAGCTATTCG CCCACCAACA TCGACTTTGA CAACACGAGT
CTACGCATTT TCGATGTGCC CGCAATCTAC GATGACGAGC AATTCAGTCA GGAATTCCAA
GCTAACTACG ACGGCGATGA TTTGAAACTC GTATCAGGCC TTTATTACTT TAAAGGCGAT
TCCTGCGGGG TGTTCGATGC CATCCTATAT GAATATTATA AAGCTTACGG TGGTCTCACT
CGTGAAGTTC GTGGTTGCAA CAACAGTGAA AGCTATGCCG CCTACGCTCA AGGCACTTAC
GACATCACAG ATAAATTGTC GATGACCGCC GGTCTGCGTT ATACCCGCGA AACCAAGGAT
GCAACTGTCT ATAACGGCGT CATGTTTACT ACGCTTTACC CCGAAACGGG CTGGATCCCA
GGATATGTTC GCGATGAAGA TGCCATCAAC GCCAGTATTC CTAAGGTGTT AGATGATGAA
GAAACTTGGT CGAAACTCAA TCCACGCTTA GGCTTAGAGT ATCAACTCAG CGACGATATG
ATGCTGTTTA CCAGTTACTC ACAGGGCTTT AAATCTGGGA CTTTCAATCC TCGTGCAAGC
TTTGCTGAGC CAGCGGTCGA TCCAGAAGTG GTTGATTCCT ATGAACTGGG TATGAAGAGT
GAATGGTTTG ACAGGCTGCG TGTTAACGCA ACCGCCTTCT ACTTAGACCA TAAAGACAGA
CAGTTCGTGA CCGTATTACC CGGTGAAAAC GCGTCCGATC TTAACCAACG TCTAGGCAAC
ATTGGTAAAT CGACGGCCAC GGGTCTGGAA CTCGAAGTGG AATACGCCGC GACTGAGTCA
TTGAATCTGT TCGCGACTCT GGGCTTAATC GATGCTAGCT TCGAGGAAGT GATCTCCTAC
GATGACGATG GAAACCGCAT CGATATCAGC GACACTTATA CTATCACCAA CACCCCAGAT
ACTACGGCAA ACGTTGGATT TAGCTACAAT ATCGATACGG ATATCGGCAG CTTTGTAGCC
AACGGTAACT ACTACTATCG CAGCGACTAC GACTTAGCCG TAGTAGATAA CCTCTTGAGC
CAAGATGGTT ATGGCCTGCT GAACCTCGGC TTAAACTGGT ACAGCAACGA CGGTCACTGG
CACGCGGGTC TGCATTGGAA AAACGTCACT AACGAAGAAT ATCTGGTCGG TAACTATGCC
TTCGTGACCC CAGATGGTAA TGGCGGATAT ACTCCAGGTT TAGGCGGTGA CAATACATTA
ATTGGTTATT ATGGCGATCC AGAGACTATC TCTCTCACCG TTGGCTATAA TTTCTAG
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| Protein sequence | MKQNTIKMSC IALAISSALA AQYAVAEDEN STGEKQATLE RIEVTARKSI ESLQNVPVAV
TSVSADDLAE NGISVMTEIQ QFSPNTTLQS SRGTNSTLTA FIRGVGQEDP LWGYEPGVGI
YIDDVYIARP QGAVLDILDV QRIEVLRGPQ GTLYGKNTIG GAVKYVTKKM SGDAELNLNA
TIGSYNQQDY KIAGQLPLID NKLYIGGAFA SLNRDGYGEF LTSAVPGQDT ENYNKDVMAG
RLSLEYTPTD NLFMRLNYDK TTDESNSKGG YRMLPSVLTD APVPDSKYDS YTSMPTWNKV
ETEGWGLTIE YGLNDDWTLK SVTSSRESYS PTNIDFDNTS LRIFDVPAIY DDEQFSQEFQ
ANYDGDDLKL VSGLYYFKGD SCGVFDAILY EYYKAYGGLT REVRGCNNSE SYAAYAQGTY
DITDKLSMTA GLRYTRETKD ATVYNGVMFT TLYPETGWIP GYVRDEDAIN ASIPKVLDDE
ETWSKLNPRL GLEYQLSDDM MLFTSYSQGF KSGTFNPRAS FAEPAVDPEV VDSYELGMKS
EWFDRLRVNA TAFYLDHKDR QFVTVLPGEN ASDLNQRLGN IGKSTATGLE LEVEYAATES
LNLFATLGLI DASFEEVISY DDDGNRIDIS DTYTITNTPD TTANVGFSYN IDTDIGSFVA
NGNYYYRSDY DLAVVDNLLS QDGYGLLNLG LNWYSNDGHW HAGLHWKNVT NEEYLVGNYA
FVTPDGNGGY TPGLGGDNTL IGYYGDPETI SLTVGYNF
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