Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3273 |
Symbol | |
ID | 4253841 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3906364 |
End bp | 3908055 |
Gene Length | 1692 bp |
Protein Length | 563 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638119913 |
Product | hypothetical protein |
Protein accession | YP_735398 |
Protein GI | 113971605 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00316716 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTGGCCC CTGAACTTCT TGAGCTAAGC AGTGATAAAA CCAAGGCGGA ATTACGCTTG ATTCCGAATG AACATGGGCC CATCACCCGT GAGGATGTGA TGCGTTTATT ATCCGTGCCT GAGTTTGCCG CCCTATTCCC CCTCGAGCCT GCGATAGATA AAGTTATCGC GCAAACCAAT TCTCTATGCC ATCAAGAAGA TGGTAAATAC GAGCTATTTG CCGTATTGGC AGAGCGCCGC GATGGCAGCG TAAAAATCGA GCTCAGCCAA GATAAAATGC AAGCCACCAT GATCTTAACC GCCCCTTGGG GAGGTAAAGC CGTCGATTTA CCCGAAATCC TCACGCAGCT TAAAAAAGAC AATGTTTGCA TGGGCTTAAG TAAGCTTAAG ATCCAAACCT TGCTGCAAAA AATGACCAAG TTAAAACCGG GTGAAAGCTG CCAGAGTGAA ATCGCTCAAG GTAAGGCCGC GATCAATGGT CAAAATGCGG TGCTGGAGCG TAAGGTTTCC CTCGCCCGTG AACGCCTATT GCAGCCGCAG GAGCGGGAAG ACGGCACAGT GGATATGCGC AACCTTGGCG CAATGATCAT GGTCAAGCCC AACGATCTGC TAATGATTAA GCATCCCGCG ACCGAAGGTT CTCCCGGCTA TAACATTAAA GGCGAAGTCC TTAAGCAAAA ACCGGGGAAA GATCTGGTGC TACAACCCGG TACTGGTACC GACTTCCACC CGAAAGATCC CAATAAACTC ATCGCCACAG TGGCAGGCCA ACCCGTTGAA ACCCGCACAG GCATGAATGT CGATGACGTG CTTCAGCTGA AAGATGTGGA TATCAGTACC GGCCATATCA ACTTTAAAGG CAGTATTTTA ATCACGGGCG ATGTGCACGA AGGCATGATG GTTAAAAGCT CAGGCGATAT TACCGTGATG GGCTTTGTCG ATTCTGCGAC CCTTGAGGCC GATGGCGATA TTACGGTGAG CAAGGGCGTG ATTGGCCGCC AAGTCAGGGT GAATGAGTTC TCCACCAATA TCACGGCTCA GGGGCAGATC AGCGCCCAAT TCGTGCAATA TTCCCAGTTA ACGGCCAAGG GTAATATTCT GATCACTAAG CAATTACTCC ACAGTAATAC CAAAACCGCA GGCACGCTCA CAGTGAGCGA TCAGAGTGGC CGCCGTGGTG ACTTAGTGGG TGGTGTCGTG CATGCCGAAA AGGGCCTCAC CGCCGTCGTC ATTGGCGCAA CCGCAGGCAC TAAAACCGAG GTGTACTGCG CCATGGAACA GGGCGAACTC AAGCAAAACC TCAAGCAGTT GGAGGAGAGC GTGCATGCAA TGGTGGTGGC GACGCTGGAT ATCGAGGCTC GCCTGAAAAA ACTGCCGCCG AAATCCGAAT GGCAGAGTGA CCCTATCATG ATCGAACAGA TCAAGATGAT GCTCGATGAG AAGAATCGCA TCTTAGCTGA ACGTTCCCGT GAAGAATTAG AATTCGATAG CCTCAAACAG GAGGTTGAAC ACTACTATGA CAAGTATCGT ATCGATGTGA TAAAGCACGT ATTCCTCAAT GCCGAGTTCC ATATTGGTCA AGCCAATCAC AGAAGCACTC GCGAACACGG TACTTGCTCA ATCACCAATC TTAATCAAGA GATTAACTTC GATTACAACG CAAAACCTAA GGCGCAAGCG GCAAGCCATT AA
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Protein sequence | MLAPELLELS SDKTKAELRL IPNEHGPITR EDVMRLLSVP EFAALFPLEP AIDKVIAQTN SLCHQEDGKY ELFAVLAERR DGSVKIELSQ DKMQATMILT APWGGKAVDL PEILTQLKKD NVCMGLSKLK IQTLLQKMTK LKPGESCQSE IAQGKAAING QNAVLERKVS LARERLLQPQ EREDGTVDMR NLGAMIMVKP NDLLMIKHPA TEGSPGYNIK GEVLKQKPGK DLVLQPGTGT DFHPKDPNKL IATVAGQPVE TRTGMNVDDV LQLKDVDIST GHINFKGSIL ITGDVHEGMM VKSSGDITVM GFVDSATLEA DGDITVSKGV IGRQVRVNEF STNITAQGQI SAQFVQYSQL TAKGNILITK QLLHSNTKTA GTLTVSDQSG RRGDLVGGVV HAEKGLTAVV IGATAGTKTE VYCAMEQGEL KQNLKQLEES VHAMVVATLD IEARLKKLPP KSEWQSDPIM IEQIKMMLDE KNRILAERSR EELEFDSLKQ EVEHYYDKYR IDVIKHVFLN AEFHIGQANH RSTREHGTCS ITNLNQEINF DYNAKPKAQA ASH
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