| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3231 |
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| Symbol | |
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| ID | 4253799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3862745 |
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| End bp | 3864631 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119871 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_735356 |
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| Protein GI | 113971563 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.821467 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000484218 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGAATC AATACACCTC TGACGCCATT GAAGTTCTTA ACGGACTCGA CCCAGTTAAA
CGCCGTCCAG GTATGTATAC CGATACCACC CGACCTAACC ACTTAGGCCA AGAGGTCATA
GATAACAGTG TGGATGAGGC TTTAGCGGGC CACGCCACTA AAATCGAAGT TGTGCTCCAT
ACCGATAACT CTCTGGAAGT CACCGATGAT GGTCGGGGGA TGCCGGTAGA TATTCACCCT
GAAGAAGGCA TTCCTGGGGT CGAGCTGATC CTCACTAAAC TGCATGCGGG CGGTAAATTT
TCGAATAAGA ATTATCAATT CTCTGGCGGT CTGCACGGTG TGGGGATTTC GGTCGTTAAC
GCCCTGTCTC GTCGCGTCGA AGTGACGGTA CGCCGTGATG GCCAAGTGTA TGATATCGCT
TTTGAAAATG GCTTTAAGGT TGAAGAGTTA AAAGTCACTG GTACTTGTGG TCGTCGTAAT
ACTGGTACTC GAGTACATTT CTGGCCCGAC GCCAGTTATT TTGATTCGGC GAATTTCTCC
AACTCCAAAC TCATCTATTT GCTGCGCGCC AAGGCTGTTT TGTGCCCGGG CCTGAGGATC
AAATTTACCA ATAAACACAC CAACGAAGTC CATGAATGGT ACTACGAGAG TGGTTTAACG
GATTATCTCA AGGCGGCGGT TGGCGATAAC CTCATGCTGC CAGAAGAGCC TTTTATCGGC
AGCTTTAAAG GACAAATTGA AGCCGCGGAT TGGGCCATTA CTTGGTTGCC CGAAGGTGGC
GATGCGATTA ACGAAAGCTA TGTTAACTTG ATCCCAACGC CATTGGGTGG AACCCACGTG
AATGGTTTCC GCCAAGGTTT GCTGGAGTCG ATGCGCGAGT TTTGCGAGTT TCGCAATCTG
ATCCCCCGCG GCATCAAGCT GTCGCCTGAG GATATTTGGG ATCGTGCCGC CTTCATTCTC
TCGGTGAAGA TGCAAGATCC GCAGTTTGCA GGGCAAACTA AAGAGAAACT TTCGAGCCGT
CAAAGCTCGG CCTTTGTCTC TGGCATTGTG CGCGATGCAT TCTCACTGTG GCTCAACTCG
AATACCGAAT TGGCCGAATC ATTGGCTGAG ATGTGTATCA ACAATGCTCA AAAGCGCTTA
AAAGCCGCTA AAAAAGTGGC CCGTAAAAAA GTGACTTCTG GCCCAGCATT ACCGGGTAAA
TTGACCGACT GTAGCGGCCA AGATCCTATG CGCGGTGAGC TCTTCTTAGT GGAAGGGGAT
TCTGCGGGCG GCAGTGCCAA GCAGGCGCGT GACCGTGAGT TTCAAGCCAT TATGCCGCTG
CGCGGTAAAA TCCTAAACAC TTGGGAGGTG GATGCCTCGC AGGTGTTGGC CTCGCAGGAA
GTGCATGATA TCTCGGTGGC GATTGGTTGC GATCCCGACA GCAACGATAT CTCCGAGTTA
AGATATGGCA AGATTTGTAT TCTCGCCGAC GCGGACTCCG ACGGGCTACA TATTGCAACT
TTACTCTGTG CCCTGTTTCT GAAACATTAC CGTGTGCTGG TCGAACAGGG CCATGTCTAT
ATCGCTATGC CACCGTTGTT CCGTATCGAT ATAGGTAAGG ACGTTTACTA CGCCTTAGAT
GAGGCTGAAA AAGAAGGTAT TCTCGACCGT ATTAGCGCCG AGAATAAAAA GGGTAAGGTT
CAAGTGACAC GCTTTAAAGG TCTGGGTGAA ATGAACCCAC TGCAATTGCG TGAAACGACC
ATGGATCCAA ACACTCGCCG TTTAGTGCAG TTAACCATTG ATGATGCAGA AGAAACCAAT
TCTCTGATGG ATATGTTGCT CGCTAAGAAG CGTTCGCCCG ATCGTAAAAA CTGGCTCGAA
GATAAGGGTG ACATGGCGGT ACTTTAA
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| Protein sequence | MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH
TDNSLEVTDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN
ALSRRVEVTV RRDGQVYDIA FENGFKVEEL KVTGTCGRRN TGTRVHFWPD ASYFDSANFS
NSKLIYLLRA KAVLCPGLRI KFTNKHTNEV HEWYYESGLT DYLKAAVGDN LMLPEEPFIG
SFKGQIEAAD WAITWLPEGG DAINESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL
IPRGIKLSPE DIWDRAAFIL SVKMQDPQFA GQTKEKLSSR QSSAFVSGIV RDAFSLWLNS
NTELAESLAE MCINNAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSNDISEL
RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEQGHVY IAMPPLFRID IGKDVYYALD
EAEKEGILDR ISAENKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDAEETN
SLMDMLLAKK RSPDRKNWLE DKGDMAVL
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