| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3229 |
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| Symbol | |
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| ID | 4253797 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3859248 |
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| End bp | 3861524 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119869 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_735354 |
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| Protein GI | 113971561 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00308276 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000104584 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGACG CGATCAAGTT AAGCTTAGAT GGCGTAGAGC AGATGCCCCT GCGGCGCTTT
ACCGAAGAAG CTTATCTGAA TTATTCCATG TACGTCATCA TGGACCGAGC CTTGCCCCAT
ATCGGTGACG GGCTTAAGCC GGTGCAGCGG CGGATTATTT ATGCCATGAG TGAGCTAGGG
TTATCGGCTC AGTCAAAACA TAAAAAATCA GCTCGTACCG TCGGTGACGT ACTCGGTAAG
TACCATCCCC ATGGCGACAG TGCCTGTTAT GAGGCTATGG TACTGATGGC GCAGCCATTT
TCATACCGTT ATCCCTTGGT CGATGGCCAA GGTAACTGGG GGGCGCCAGA CGATCCTAAG
TCCTTCGCCG CGATGCGTTA TACCGAGGCG CGCCTGTCTA AGTTCTCTGA AGTATTATTG
TCTGAGCTGG GGCAAGGTAC GGTCGAGTGG GGTGCTAACT TCGATGGCAC CTTGAAAGAA
CCTAAAGTGC TGCCCGCACG TTTGCCGCAT ATTTTACTCA ATGGCATCAC CGGGATTGCG
GTGGGTATGG CGACGGATAT TCCACCCCAT AACGCCAGAG AGCTAGTCAA TGCCTGCGTG
GCCTTGCTTG ATGATCCTAA ACTGGAGCTG GAGCAGTTGA TGGGCTACGT GCCAGGGCCT
GATTATCCGA CTGAAGCCGA GATCATCACC CCGTCTGCCG ACATTGCCAA AATCTATGAA
ACGGGTCGCG GTTCCTTAAA AGCCCGCGCC GTGTATAGCG TCGAAGCCGG TGAGATAGTG
ATCACTGCAC TACCACATCA AGCCAGCAGC GGTAAGATTT TAGAGCAGAT CGCCGCGCAG
ATGCAGGCGA AAAAATTGCC TATGGTGGCG GACTTACGTG ATGAATCTGA CCATGAAAAC
CCTGTACGAT TGGTGGTGGT GCCGCGTTCC AATCGCGTCG ATTGCGATCA ACTCATGGCA
CACTTGTTTG CGACCACAGA TCTTGAGAAA AGCTTTAGGG TAAACCTTAA CGTATTGGGG
CTTGATGGTC GTCCACGGGT GAAGGGACTT AAAGACCTGT TAACCGAATG GTTAGAGTTC
CGTGTCGATA CTGTAAGACG TCGCCTCGAA TATCGTCTCG ATAAAGTGCT AGCGCGTTTA
CATATCCTCG AAGCCTTGAT GATTGCCTTC CTCAATATCG ATGAAGTAAT TGAAATCATT
CGTTTCCACG ATGAGCCAAA GGCCGAGCTA ATGGCGCGCT TTAACCTGAC GGATAAGCAA
GCCGAAGCTA TCCTCGAGTT AAAATTACGC CATTTAGCCA AGTTAGAAGA GTTTAAAATC
AAGGCCGAGC AGGATGAGCT TGAAGCCGAA CGTGAGAAAT TAGAGCTGTT ATTAGGCTCA
GATCGCCGCT TAAAAACTTT GATCAAAAAA GAATTAATTC AAGATGGTGA AACCTATGGT
GACGATCGCC GCTCACCGAT TGTTGAGCGT CACGAGTCCC GCGCCTTAAC CGAGCAGGAG
CTGACACCGA GTGAGCCAGT GACTGTGGTG TTATCTGAAA AAGGCTGGGT GCGTTGTGCT
AAGGGCCATG ATATCGATGC CGAGTCCTTA TCCTATAAGG CGGGCGATCA ATATCTGTGT
AGTGCGATGG GGCGCAGTAA TCAGGCGGCG GTATTTATTG ATTCATCGGG CCGCGCCTTT
GCGACCGACA GTCACAGCCT GCCATCGGCG AGGAGCCAAG GCGAGCCAAT CACCACGCGC
TTTAATATGG CGCCGGGTGA AACCATGCAG CACGTGATTT TGGGTGAAGA CGAACAATGT
TTCCTGCTCG CCACCGATGC AGGTTACGGT TTTATCTGTA CTTACAATGA TATGGTGTCA
CGTAACAAGG CGGGGAAAGC CCTGTTAAGC CTACCGCCGA ATGCCAAGTC CTTACCGCCG
AGACTAATTG ACCGCAGCCG CGAGATGTCT ATCTTAGCGA TCACCAATGA AGGGCGTATG
TTGCTGTTTT CATTAGAAGC ATTACCGCAG TTGTCTAAGG GTAAAGGGAA CAAGATTATC
GGCATCCCGA GCGAGCGCGC TAAGAATCGT GAAGAACTGA TGACCCATTT GCAGTTAGTG
CCAGCCGATA CGCCAGTCAC CCTATGGGCG GGCAAACGTA AGCTCACGCT AAAACCGAGC
GATTTAGAGC ATTACCGTGG TGAGCGTGGC CGTCGCGGCG CCAAACTTCC GCGTGGATTA
CAGCGTGTTG ATAGCGTGGA ATTAGGCGAA GGTGCTGAGG TTTTGCCTAG CATTTAG
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| Protein sequence | MSDAIKLSLD GVEQMPLRRF TEEAYLNYSM YVIMDRALPH IGDGLKPVQR RIIYAMSELG
LSAQSKHKKS ARTVGDVLGK YHPHGDSACY EAMVLMAQPF SYRYPLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSKFSEVLL SELGQGTVEW GANFDGTLKE PKVLPARLPH ILLNGITGIA
VGMATDIPPH NARELVNACV ALLDDPKLEL EQLMGYVPGP DYPTEAEIIT PSADIAKIYE
TGRGSLKARA VYSVEAGEIV ITALPHQASS GKILEQIAAQ MQAKKLPMVA DLRDESDHEN
PVRLVVVPRS NRVDCDQLMA HLFATTDLEK SFRVNLNVLG LDGRPRVKGL KDLLTEWLEF
RVDTVRRRLE YRLDKVLARL HILEALMIAF LNIDEVIEII RFHDEPKAEL MARFNLTDKQ
AEAILELKLR HLAKLEEFKI KAEQDELEAE REKLELLLGS DRRLKTLIKK ELIQDGETYG
DDRRSPIVER HESRALTEQE LTPSEPVTVV LSEKGWVRCA KGHDIDAESL SYKAGDQYLC
SAMGRSNQAA VFIDSSGRAF ATDSHSLPSA RSQGEPITTR FNMAPGETMQ HVILGEDEQC
FLLATDAGYG FICTYNDMVS RNKAGKALLS LPPNAKSLPP RLIDRSREMS ILAITNEGRM
LLFSLEALPQ LSKGKGNKII GIPSERAKNR EELMTHLQLV PADTPVTLWA GKRKLTLKPS
DLEHYRGERG RRGAKLPRGL QRVDSVELGE GAEVLPSI
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