Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3227 |
Symbol | |
ID | 4253795 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3856521 |
End bp | 3857585 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638119867 |
Product | outer membrane porin, putative |
Protein accession | YP_735352 |
Protein GI | 113971559 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000101033 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000000540368 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAGA ATCTGCTCGC TACAGCGATT GCCGCTAGTC TCGCATTTTG CTCATTTAGC TCTCAGGCCG ATGGCCCAGA GTTTTACGGC CATGTCGATC TGAGTATCAC CGACTCAGAG AAAGGCTATG CCGCTCAAAA TCAGAAAGAT GGCACAGTAC TCGAAAACAA CTTTACTTGG GTTGGTGTTA AAGGTTCAGA AAGCGTTAGT CCATACTTCG ATATCATTTA TCAAATGGAG TTTGGCGTAG AAAACTTTGA TAACTCAAAC AAAACCTTTA ATGCGCGTAA TACCTTCCTC GGAGTACGAA GCGTTGCGGG TACCGTTTTA GTCGGCCGTA ACGATACGGT ATTTAAAGCG TCCGAAGGCG GTTTTGATTT GTTTGGTAAC ACCAACGCCG ATATCGACCT GTTACTGGCA GGCCAAACTC GCTCTGCTGA TGGTATTTCC TATTATTCGC CTAAGATCGC CGATCTTATC ACCCTCAACG CCACTTATTT GATGAGTGAT AACTATGATC AACGCGATAG CCAAGGTAAC GAGGTCTACA GCCAAGATCA AATGTATGCC TTAAGCGCTA CATTAGGGGA TAAGACCTTA AAAACCCATA ATTACTACGT TGCTGCGGCC TATAACGATG GTATCGATAA TATTGAAGCC TACCGCGGTG TCGCCCAAGC AAAATTTGGC GATTTCCTCT TTGGCGCCAT TTATCAGCAC AGCGAGCATA TTGACGACAG ATTCTCAAAC CTCTCAGGTG ATACCTATTT TGTCAATGCC GCCTATCTGA TGGATGATTT GAAACTGAAG TTAGTTTACG GTAAGGATGA CTCAGGTTTA GGTAAATATG TCAGCCGCAT GGTCGGCAGC CAAGACAGCG CCAATCTTGA ACAAGTGAGT GATGTGGACC TACAGCAGCT CACTTTAGGC GCAGACTACC GACTTAGCAC TAAGACTATG GTCTATGGTC ACTACACTCG CTTCGACGGC GACCTTATGC TAGCCGGTAC AAAACAAGAC CTAGACGACA ACCTATTTAC AGTAGGTTTA CGTATTGATT TTTAA
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Protein sequence | MKKNLLATAI AASLAFCSFS SQADGPEFYG HVDLSITDSE KGYAAQNQKD GTVLENNFTW VGVKGSESVS PYFDIIYQME FGVENFDNSN KTFNARNTFL GVRSVAGTVL VGRNDTVFKA SEGGFDLFGN TNADIDLLLA GQTRSADGIS YYSPKIADLI TLNATYLMSD NYDQRDSQGN EVYSQDQMYA LSATLGDKTL KTHNYYVAAA YNDGIDNIEA YRGVAQAKFG DFLFGAIYQH SEHIDDRFSN LSGDTYFVNA AYLMDDLKLK LVYGKDDSGL GKYVSRMVGS QDSANLEQVS DVDLQQLTLG ADYRLSTKTM VYGHYTRFDG DLMLAGTKQD LDDNLFTVGL RIDF
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