Gene Shewmr4_3218 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3218 
Symbol 
ID4253786 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3845629 
End bp3846561 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content52% 
IMG OID638119857 
Productphage integrase family protein 
Protein accessionYP_735343 
Protein GI113971550 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000104017 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTACAG CGACTGCTTA TGCGCTCTAT TTGAGCCGTC TTGCGCCCAA TAGTCAGCGC 
TCGATTGCTT CGCAGATGCG CAGCATTGCA CAGCTGATGG ACTGGCCTGA CGCGACAATA
GGCAAGCAAC TCAGCAGCAT TAACTATCAA CAAGCGATGC AGATACGCGC ATTGCTGATA
CACGAGCAGT GGTCGGCGCG CTCGATTAAC CGTGCGATGA CTGCAATTAA GAGTATTGTC
AAAGTCGCGG CCTTGATGGG TGAAGCCGAT ATGCAGCAAG TCGCGCATAT CAATAGCATC
GCTAACATGA AACACGGTGC CCATCAGGGC AATCCCCTGA GTGCAGAGCA AGTCACTAAG
CTACTCGCCT TGCTTTCCAA GCGCCAAGAC ACGTATGGAC TTCGCACGTT AGCTATCTTT
GCACTGTTCC TCGGAACGGG GTTGCGCCGT AGTGAGCTTG CGGCACTGAT GCTCGCTGAT
TATGACAGTG CAACATCAAC GATTAAGGTG GTTGCGGGTA AAGGTAATAA GAGCCGTATT
CTGTTCTTAC CCAATTGGGT TGAGCAGCAT GTCATCGCTT GGCTCAACGT GCGCAAGATG
CAATTGGGGC CACTCATTTG CCACTGTCGC ACGACTGGCA TTATCGTCCA TTACCGCCCC
GTGAGTCAGG ATGCGCTCTA TCGGTTAGTC AAAGACAAGC TAGGGGATAT CGGCGTAATG
GGTGCATCAC CCCATGACTT ACGCCGCACC TTTATTACTC GGCTACTGGA GCAAAACGTT
GATATCAACA CCGTGCGCCA AATGGCAGGT CATGCGGATA TCAGCACCAC CACTATTTAC
GACAAACGCG GTGATGCGTT TATGCGTGAA GCCGCTGCCA CCCTGAACTA TGTGTCAGCA
CCGAACGAAC GGGGCGGGAA AACAAGATGC TAA
 
Protein sequence
MTTATAYALY LSRLAPNSQR SIASQMRSIA QLMDWPDATI GKQLSSINYQ QAMQIRALLI 
HEQWSARSIN RAMTAIKSIV KVAALMGEAD MQQVAHINSI ANMKHGAHQG NPLSAEQVTK
LLALLSKRQD TYGLRTLAIF ALFLGTGLRR SELAALMLAD YDSATSTIKV VAGKGNKSRI
LFLPNWVEQH VIAWLNVRKM QLGPLICHCR TTGIIVHYRP VSQDALYRLV KDKLGDIGVM
GASPHDLRRT FITRLLEQNV DINTVRQMAG HADISTTTIY DKRGDAFMRE AAATLNYVSA
PNERGGKTRC