Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3218 |
Symbol | |
ID | 4253786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3845629 |
End bp | 3846561 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119857 |
Product | phage integrase family protein |
Protein accession | YP_735343 |
Protein GI | 113971550 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000104017 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTACAG CGACTGCTTA TGCGCTCTAT TTGAGCCGTC TTGCGCCCAA TAGTCAGCGC TCGATTGCTT CGCAGATGCG CAGCATTGCA CAGCTGATGG ACTGGCCTGA CGCGACAATA GGCAAGCAAC TCAGCAGCAT TAACTATCAA CAAGCGATGC AGATACGCGC ATTGCTGATA CACGAGCAGT GGTCGGCGCG CTCGATTAAC CGTGCGATGA CTGCAATTAA GAGTATTGTC AAAGTCGCGG CCTTGATGGG TGAAGCCGAT ATGCAGCAAG TCGCGCATAT CAATAGCATC GCTAACATGA AACACGGTGC CCATCAGGGC AATCCCCTGA GTGCAGAGCA AGTCACTAAG CTACTCGCCT TGCTTTCCAA GCGCCAAGAC ACGTATGGAC TTCGCACGTT AGCTATCTTT GCACTGTTCC TCGGAACGGG GTTGCGCCGT AGTGAGCTTG CGGCACTGAT GCTCGCTGAT TATGACAGTG CAACATCAAC GATTAAGGTG GTTGCGGGTA AAGGTAATAA GAGCCGTATT CTGTTCTTAC CCAATTGGGT TGAGCAGCAT GTCATCGCTT GGCTCAACGT GCGCAAGATG CAATTGGGGC CACTCATTTG CCACTGTCGC ACGACTGGCA TTATCGTCCA TTACCGCCCC GTGAGTCAGG ATGCGCTCTA TCGGTTAGTC AAAGACAAGC TAGGGGATAT CGGCGTAATG GGTGCATCAC CCCATGACTT ACGCCGCACC TTTATTACTC GGCTACTGGA GCAAAACGTT GATATCAACA CCGTGCGCCA AATGGCAGGT CATGCGGATA TCAGCACCAC CACTATTTAC GACAAACGCG GTGATGCGTT TATGCGTGAA GCCGCTGCCA CCCTGAACTA TGTGTCAGCA CCGAACGAAC GGGGCGGGAA AACAAGATGC TAA
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Protein sequence | MTTATAYALY LSRLAPNSQR SIASQMRSIA QLMDWPDATI GKQLSSINYQ QAMQIRALLI HEQWSARSIN RAMTAIKSIV KVAALMGEAD MQQVAHINSI ANMKHGAHQG NPLSAEQVTK LLALLSKRQD TYGLRTLAIF ALFLGTGLRR SELAALMLAD YDSATSTIKV VAGKGNKSRI LFLPNWVEQH VIAWLNVRKM QLGPLICHCR TTGIIVHYRP VSQDALYRLV KDKLGDIGVM GASPHDLRRT FITRLLEQNV DINTVRQMAG HADISTTTIY DKRGDAFMRE AAATLNYVSA PNERGGKTRC
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