| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3209 |
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| Symbol | |
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| ID | 4253778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3832025 |
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| End bp | 3837088 |
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| Gene Length | 5064 bp |
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| Protein Length | 1687 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638119849 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_735335 |
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| Protein GI | 113971542 |
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| COG category | [K] Transcription |
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| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000587168 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAGATGA AAGAAGTAAT TGATGGTTTA TTTCATGATA ATAGTAATTA TGCAACACCA
GATCAAGCGA CAAACCAAGC AAGCTCTTTA GTATCTTTAT CAACGGATTT ATATACAGAT
TCAAAACGCT TTATCTATGA GCTTTTACAG AATGCAGATG ATTCAGCAGA GCCTGGACAT
TCGGTAAAAG TTTGGATTAA GGTATTCGGA AATTCTCTGG TTGTAGCTCA TTCTGGTCGA
GAGTTTAGTC CTCGTGATGT GAGAGGTATT TGTAACGTTA ATTATGGAAC TAAAAAAGAA
GATTCAAGCA AAACGGGTTA TAAAGGTATA GGGTTTAAAT CTGTTTTTGG ACAATCTGAT
AAAGTTACGA TTTTTACAGC TAATGAATAT TTTAGATTTG ATGCATCCTA TCCATTTAAT
TGGATATGGG ATGGTACAAA AGAAGAGTGG GAAGCAAAAA GTGATAGGGA GTTTGTTAAT
CCTTGGCAGA TAATTCCCAT ATACACCGAT GTAAGAGAAG GGATTTTAAA ACCTATAGAA
CTTTATCTAA AAACAATAAA TGCCAATGTA GCAACAATTA TTGAATTAAA TGATAAAGGC
GATGTTCTTT TGGCTCTTAA AGAATTGTCA GAAGATGTCA ATATGTACCT TTTTTTGAAA
AGTATTTCAT CAATTAATTT TGATATAGAT AATAGAAAGC ATATTGAAAT AGATCGTTCT
GAAAGTAATC GTATAGTTTT AAAAGATGGC CAAAGTGAAC AAAAAAAATG GTTGACTAGC
TCTATAACAC TGAATGTACC TAGTGATCTA AAAGTCGCTC TTCAAGATGA AAGGAATATA
CCTGACAAAC TATTAAATGC CGAGACTATT GAGTTAACAC TTGCTGCAAA AACAGGCGCT
GATGGAATAA TAAAGCTGTC TCAGAATGAA AGACGAATAT ATTCTTATTT ACCTACAGAA
GAAACTAAAT ACTCACTACC TGTTTTAGTA AATACTAGTT TTCTTACCAA CGCAAACCGA
GAGAACCTTC ATGCAGACTC AAAGTGGAAC CAATGGCTGT TTAAGTGTAT TTCGGTTGAA
GTATTCAAAT GGATTGCACG CTTAGTTGAG ACAGAATATC AGTATCAAGC GTACAAGTTA
ATTCCAGATA GAATACACAA TGATGAATTG GGAACACAAT TCAATATAGG TAGGCAAGAA
GCTATCGAAA CTGTTGCTTT TGTGCGAGAA AAGCCGGAAT CATTAGTTAA AATTAAAGAC
TCAATAATCG ATTTTACTTT TTTATCTAGA AAGTCATTTA TTGGTGAGAA AGCGATAAAA
TCATTCATTG ATGGTTCTGA ATCAACAGGT AAAGAAAGTA CTAAAGTCTT TGTCGAAAAC
ACTGGATTTG GTAAGGAGTT TAAAGCATTA GGAGCAAGTA CTTTTGAATG GAGTTTTTTA
CATGGACTTG TTAAATCAAA AGACTTTATT GATGAACATT CAATAGAAAA TAACATAGAG
TTAATAAAGC ACTTAAAATA TCTTTCTGAA AAAGAAACTT TTGAAAGCCT TACTAAAGCA
CAACTTAGTG AATTAGCTTT TATTTGGGAT CATAAAGGGG TTTTAAACGC ACCATGCAAC
ATTTATTTTC CAACAAGTAA AGATACAAAC TGGAATGTAA AAGATAGTGA ATTATCTTTT
ATTCACCCAA GGTTGCAAGA TTGGTTATCA ACTGAAATTG ATATCAGGTC GTGGCTCGGG
AATCTTGGGG TGGTTGAAAA AACAGATATC AGTTTTATTA CGAAAACAAT AATCCCTAAT
GCAGAAAGTT ATATTACAGA AGAAAATGCA GTTAAAACCA TGCATGACCT ATTTTCCCTT
TATAAAAAAG GTGACTTAGT TGCAGATGTG CTTTCAAGTT TATCCAACTT AAAACTAATG
ACTACTCAAG GATGCCTGCT AAAGGCAAGT GAATGCTTTT TATCGAAAAT ATACTTACCT
CGTATAGAAA TAGAAGGGGT ACTTAATCAA GATATATTTG TTAGTGAGGT TTATTTAACT
AAAAAAGCAG ATACAGATGA ATGGAAGAGA TTTTTTAAAT TTCTTGGTGT TCAAGATGGA
ATAACTTGTA TTAAAATTGA AGATAAAACA AGCCGAACAG AACTGGTGGC GCAAGGCTAT
TTAAATGGTT ATTTTGATAG GAGTGATAAA AAATTCAGGC CATGGCAAAC AACGTTTACA
GCCGATACTT ATAGTAAAAT ATCTACTCTT AAGTATATAA ACTACTCAAT TAATAATTAT
CAATTCTCTC TACAGTTTTG GAGAGATATT GTTGAAAATT GTTCTACTAC AGATTTAATT
TCATTTCCAA TAGCATTCTG GGGGAACTCT GGTAGGCCAG GTAGAACAAG TGGTGACAAA
GTTGGTGACT ATACCTCATG GTTTATTAAA AATCTCAAGT GCATTCCTGT TGTTACTAAA
GAATGTGAAT CATCAGATAA AGTGCTTCTT AATACAGAAG AAATGAAGAA AATTGCAGGT
AATTACCTAC CCGTATTTGA TGGTCCTCAA TTAACACCTA ATTGGCTCTC ATTCTTTGAT
TTTAAAACTT TTTTAGAGGT TTCTGACTAT CTAAAACTGC TTAGCGAAAT ATCAAAAGAC
ACAACTGAAA AAGGTGATGT TAAAAAGAAA AATATCGAAA CAATACAGTT AGTCTATAAA
GAGTTATTAA CTCAATGTGT TAATTGGAAT GAACAAGAGT TAAAACAAGT TGAAGAGTGG
GCCAAAGACT CAAAATTGCA AAATACCAGA GGTATTCCTG TAAGTTGCAA TTCTTTAAAA
TATTTCTTAG ATGGAAATAG TAACGTATTC CATGATGAAT TTGATTTTTT AGAATTGAAT
GCGCAAAACA AAAACAATCC TAATTTAAAA TCATTTTTAA AGGCTTTCAA TATTAAGATT
TTGGAACAAA GTGATTTTGA GTTAATTAAA ACAGCTCCTG AAAAATCTAA CGGTCTCATA
ACAAAAATAA AAAATATAAT CCCGTATTTT AAAGTTTGGG TAATTAATGA ATGTAGCGAT
GATAAAACTA AAGAAAATAT TACAAAATTA GATGATAAAT TGTCGCAGTT AGATGCTATT
GAAGCTGATG CGTTACAGAT TAAATATAGT GATATCGACT TCGTTAGAAA TGTTAATTTA
CATTTTGATA AGAATAAATT TTATGTAACA AAGCCGTGGA ATTCGAATCG AGTATTAATA
GACCTTTCAG ATAAGTTATG CAATTACTTC GAGTTACTAG GTCACGATAA GAAACTAGAT
TTTCTCTTAA GGTCAGAAAA TATAGAAATA AATGAGCATT TCAAAGAGTT GTATATTGAA
ATTCCTGACC ATGAATTATT CACTAATGAG CATAGGTCGA TATTAGATGA AACTATTCAG
AAGTCTTTGG CTAGTATAAC TATTCGCTCA TTTGAGGATC TTGAAGACGA AGTAGAGAAA
AAAGGTATTT CGCCTGATTT TTTTCACATC CCTTCATCAG ATTATAAGCG GCTAAAGTAT
GTACAAGGCT TAATATCAAG GGCAGTAAAG AATATTACTC ACTACTTAAA TTCTTTGCCT
GAGTATGATT GCTCAAATCA CTATGAGATA GCCAAAAGTA TTATCGGAGG TATTACTAAG
AATGGCAAGG ATGTCACAAT AGTTGCTAGA CCTTCAGATA ATGATGAGGT TCTGCTTTAT
TATACCGCAG AGTTTGATGT GCTGGAGTAT GTAGACGCAG AGTTATGGTG TGAAGATGGT
GAAAATACGC CACAAAAGAT CACTTTAGGA CAATTTCTCA AGTTAACAGA AATAAACAAA
ATTCCAGTAA CACGATTAGC TATTTCAAGC ACTGAAGTAA CCGAGTTATG TAACAAACCA
AAATCTTTGA AGCACGAATT TAATGCAGTT CCGTTAGCCC CATTTCAGGT TGCTAAAATC
ATAGCTTCGT TCGCAAATAC AGAAGGCGGT ACTTTAGTAT TTGGAATCAA TGAGATTACT
TCAAATCTGA ATGAAATAGT TGGTTTAAGC TCTGATTACC GAATAGGTGA AATCATGACT
GAAGCAATTT CATTTATATC ACCGAAACCT GAGGTTACTT TTGATTGGGT TAATATAGAC
TCTAGACGTC TTTTTGTTAT TAAGACGGAA AAAACTATTG ATGAAGTATC CCTAGGCAAT
CAAATATACA TAAGGGAAGG AAAAGAAAGT AAAATTAAAT ATAATATTAC CTCCCAAGGA
CCTAGCATGG GAAAAACACT TTCAATTCCA GATTTTGAAA AAACCATAGC AATTATTATT
GGTATCGAAA ATTACGCCCC AAGAGATAAT AACAAGGTCC CATCGGTAAA ATATGCTGAG
AATGATGCCC TATTATTTAA GAAAGCACTA ATTGAGTCTT TAGACGTAGA TGAAGAAAAC
ATTCATTTGA TTCTCAATGA TGAAGCTTTA CACAACAATT TGCTGTATGA CTTACAAAGC
TTGTTCCATG GCTTGTCCTC AAGAGATCGT CTTATTTTTT ATTATGTGGG ACATGGATTT
CATAATGGGA TAACTAATTA CTTGTCTACT TACGACATGC ATCCGATGCA TGTAGATAAA
ACTGCGATAT CACTAAGAGA TGTTTTATTG GATCCTCTGG CAAAATCAAA ATGTAATTCA
GCAATGATTT TCATTGATGC CTGTGCACAG TCATTTTCGG ATGAAAATAG TAGGAACATA
CTAGCGAATA TCGACGGTGA TGAGATAAAG CTCATATTGA GTGATAGTAA CTATCTAGCA
TCATATTTTT CTTGCCAACC AGGGCAAAGC TCGTACTCAT GTGACAACTT GAAGCAAGGG
ATTTGGACCT ATCACTTATC TCAAGCCATG ACATGTAAAC AGCCTGAAGC AATTTTGTCA
GAAAAATACG TAACAGATAG ATCTTTGAGT GACTATTTGG CCAGATCAGT AACTTCCTAT
GTTAAAGATG AGCTTGGTTA TGTTCAAAAT CCAAAGTCGA TCTTAGATGC TGATAGCGAG
AATGTATTAG TTAAAATTTC ATAA
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| Protein sequence | MKMKEVIDGL FHDNSNYATP DQATNQASSL VSLSTDLYTD SKRFIYELLQ NADDSAEPGH
SVKVWIKVFG NSLVVAHSGR EFSPRDVRGI CNVNYGTKKE DSSKTGYKGI GFKSVFGQSD
KVTIFTANEY FRFDASYPFN WIWDGTKEEW EAKSDREFVN PWQIIPIYTD VREGILKPIE
LYLKTINANV ATIIELNDKG DVLLALKELS EDVNMYLFLK SISSINFDID NRKHIEIDRS
ESNRIVLKDG QSEQKKWLTS SITLNVPSDL KVALQDERNI PDKLLNAETI ELTLAAKTGA
DGIIKLSQNE RRIYSYLPTE ETKYSLPVLV NTSFLTNANR ENLHADSKWN QWLFKCISVE
VFKWIARLVE TEYQYQAYKL IPDRIHNDEL GTQFNIGRQE AIETVAFVRE KPESLVKIKD
SIIDFTFLSR KSFIGEKAIK SFIDGSESTG KESTKVFVEN TGFGKEFKAL GASTFEWSFL
HGLVKSKDFI DEHSIENNIE LIKHLKYLSE KETFESLTKA QLSELAFIWD HKGVLNAPCN
IYFPTSKDTN WNVKDSELSF IHPRLQDWLS TEIDIRSWLG NLGVVEKTDI SFITKTIIPN
AESYITEENA VKTMHDLFSL YKKGDLVADV LSSLSNLKLM TTQGCLLKAS ECFLSKIYLP
RIEIEGVLNQ DIFVSEVYLT KKADTDEWKR FFKFLGVQDG ITCIKIEDKT SRTELVAQGY
LNGYFDRSDK KFRPWQTTFT ADTYSKISTL KYINYSINNY QFSLQFWRDI VENCSTTDLI
SFPIAFWGNS GRPGRTSGDK VGDYTSWFIK NLKCIPVVTK ECESSDKVLL NTEEMKKIAG
NYLPVFDGPQ LTPNWLSFFD FKTFLEVSDY LKLLSEISKD TTEKGDVKKK NIETIQLVYK
ELLTQCVNWN EQELKQVEEW AKDSKLQNTR GIPVSCNSLK YFLDGNSNVF HDEFDFLELN
AQNKNNPNLK SFLKAFNIKI LEQSDFELIK TAPEKSNGLI TKIKNIIPYF KVWVINECSD
DKTKENITKL DDKLSQLDAI EADALQIKYS DIDFVRNVNL HFDKNKFYVT KPWNSNRVLI
DLSDKLCNYF ELLGHDKKLD FLLRSENIEI NEHFKELYIE IPDHELFTNE HRSILDETIQ
KSLASITIRS FEDLEDEVEK KGISPDFFHI PSSDYKRLKY VQGLISRAVK NITHYLNSLP
EYDCSNHYEI AKSIIGGITK NGKDVTIVAR PSDNDEVLLY YTAEFDVLEY VDAELWCEDG
ENTPQKITLG QFLKLTEINK IPVTRLAISS TEVTELCNKP KSLKHEFNAV PLAPFQVAKI
IASFANTEGG TLVFGINEIT SNLNEIVGLS SDYRIGEIMT EAISFISPKP EVTFDWVNID
SRRLFVIKTE KTIDEVSLGN QIYIREGKES KIKYNITSQG PSMGKTLSIP DFEKTIAIII
GIENYAPRDN NKVPSVKYAE NDALLFKKAL IESLDVDEEN IHLILNDEAL HNNLLYDLQS
LFHGLSSRDR LIFYYVGHGF HNGITNYLST YDMHPMHVDK TAISLRDVLL DPLAKSKCNS
AMIFIDACAQ SFSDENSRNI LANIDGDEIK LILSDSNYLA SYFSCQPGQS SYSCDNLKQG
IWTYHLSQAM TCKQPEAILS EKYVTDRSLS DYLARSVTSY VKDELGYVQN PKSILDADSE
NVLVKIS
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