| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3191 |
|---|
| Symbol | |
|---|
| ID | 4253761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3811837 |
|---|
| End bp | 3813777 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638119832 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_735318 |
|---|
| Protein GI | 113971525 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000281048 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.000124168 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGCT ATCTGTTTCA GCGTGAACAG GAAACCTCTC ACTTGCGATA TAGCCTACGA
TATTTAGCCA TTTGTCTTAT GCTGCTTATA GGGCCGCTAA GAGTTGCTAT TGCTGAAGAA
AAGACACGAG TCGATCAGAT TTTTGCATTA TTCGATAGTG GCGAGAGCAT GACCCGTGAA
TCTATCGAGC AAAATATATC TCTGCTGGAA AAACTCATTT CAAGTGATGA TACAGTTCGT
ATCGAAAAAC TGAATCAGCT CAAATGCTGG AATCAGCCTT CTGAGACCGA AGCTGACGTC
TCGCGCTCTC TCAAGCATAC CGAACAAATA CTGACACAGA TTTCGCCAAG TGCTTCCCCG
CATTTCGTTA TCGATGTCAC CCTTTGTCAT GCTTGGTTTT TACAGCTTAG TGGTGACATT
AATGGTGCAA TGGAAGGCTA TAGTAAGAGC GTAAAAAGTG CATATGAGCA CGAGGATATA
AAACTCATTG CCGATGCGCG CAGCCTTCGT GGAGCTCTAC ATTCCTACAT TGGCGACTTT
TCAGAGGCAT TAGACGATCT CGTCACGGCT CAAGGGCTGT ATGAATCATT AAATCTCACG
GGCTGGGCCA ATATAAATTT AACCGACATA GCCACCAGTT TTAGGCGCTA TGGCGACCCT
GAGAGCGCCA TAAAATACTA TCAAAAAATC AAAAATCTCT ATTTAAAAAA TGGCAACTTG
GATCAAGTTG CCAGTGTCAC CTCGGATATT GGAATCGCCC TAGATGAAAT GGGTGAACAT
GAACAGGCAA TAGAAAACTT TCGCTTTAGT TACCAGTATT TTAAAGACCA TAAATATAAG
CTTATTGCCG CAATCAACGC GACCAATATT GCCTACAGCC TGATTCAATT AAATCGTTTA
GAAGAAGCTG AAAAATATTT AAAAGAAGCT GCGCTCGACA TTACAGAAAA AGAGCCTGGG
TCTTATAGTT TTATGAAACT TTTTATGGGG AAAATCCGCT ATCAGCAAGG CCTTTACCAA
GAAGCACTAG AAGAACTGAC CTCCGCCGAA AAGGCATTTC GTACCATGCA TAATGACCGT
GGCCTAATCC AACTTTTACA ACTAAAAAGT GACATCTATG CCGCGATGGG GGACTTACAA
CATGCCTACC ATACTCTTCA GCAATTTGTT GATCTAACAA AGAAAGTCGA TAACAGCTCC
ACGGCGCATC AAACAACCGA GCTAAAAGTG AAGTTCGATA CCAGCAGGAT CGAATCGGAA
AACAAACGCT TGCTCGATAA TCAAAAATTA AAAGAACAAG AGTTAGCACT GCTCGAGAAA
AATAAATCAC TGCAACTGAT TATCCTGCTG CTCACGGGCT GTATTTTGGC GATAGTGTCA
CTCTTTGCCT ACAAGCAAGT GCACCGTAAC CGTCACCTAC AGACCATAGC CTTAACAGAT
TATCTGACCC AATTGCCCAA TCGCAGGCAT ATATACGCCC AAGCGGAGCA ATATTTTCAG
CAGGCCCTCA AACAAAAAAC ACCTTTATCT GTGATTATTT TCGATGCGGA TTATTTTAAA
AAGATTAACG ATAATTTCGG CCATGAAATT GGCGATCAAG CCCTGTTAAC CATAGCCCAG
GCGTGTAAAG AATTAACCGC GGACCGCAAT CTGATTGGCC GGATCGGCGG TGAGGAATTT
TTGATTTTAT TACCCAATAC TACCGCTGAA CGCGTTTGGG AACTGGCCCA TGAATTACAA
AGCTTAATCA GCCGTTATGG CGCCATTAAT TTACCGGAAG AGTTAAAACT GACTGTCAGT
GCAGGGGTTG CCACCTTAAG TCCTGAGGCA AAGCCTCAAG ATGATAGCTT TGCCCGTTTA
CTAAAACGAG CCGACAATGC CCTCTACGAA GCAAAAAACG CCGGAAGAAA CTGCGTAAAA
GCTGCAAAGG CTACCGACTA A
|
|---|
| Protein sequence | MISYLFQREQ ETSHLRYSLR YLAICLMLLI GPLRVAIAEE KTRVDQIFAL FDSGESMTRE
SIEQNISLLE KLISSDDTVR IEKLNQLKCW NQPSETEADV SRSLKHTEQI LTQISPSASP
HFVIDVTLCH AWFLQLSGDI NGAMEGYSKS VKSAYEHEDI KLIADARSLR GALHSYIGDF
SEALDDLVTA QGLYESLNLT GWANINLTDI ATSFRRYGDP ESAIKYYQKI KNLYLKNGNL
DQVASVTSDI GIALDEMGEH EQAIENFRFS YQYFKDHKYK LIAAINATNI AYSLIQLNRL
EEAEKYLKEA ALDITEKEPG SYSFMKLFMG KIRYQQGLYQ EALEELTSAE KAFRTMHNDR
GLIQLLQLKS DIYAAMGDLQ HAYHTLQQFV DLTKKVDNSS TAHQTTELKV KFDTSRIESE
NKRLLDNQKL KEQELALLEK NKSLQLIILL LTGCILAIVS LFAYKQVHRN RHLQTIALTD
YLTQLPNRRH IYAQAEQYFQ QALKQKTPLS VIIFDADYFK KINDNFGHEI GDQALLTIAQ
ACKELTADRN LIGRIGGEEF LILLPNTTAE RVWELAHELQ SLISRYGAIN LPEELKLTVS
AGVATLSPEA KPQDDSFARL LKRADNALYE AKNAGRNCVK AAKATD
|
|---|
| |