| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3188 |
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| Symbol | |
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| ID | 4253758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3808979 |
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| End bp | 3810667 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119829 |
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| Product | malate dehydrogenase |
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| Protein accession | YP_735315 |
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| Protein GI | 113971522 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000330281 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGATA ATAAACGCCC CCTCTATCTT CCGTTTGCAG GACCTGCCAT TCTTGAAGCG
CCATTGATTA ACAAGGGCAG TGCATTTTCG GAAGAAGAGC GTATTTTCTT TAACCTCGAA
GGCTTAGTGC CCTATGCCAT TGAAACTATT GAAGAACAGG CTTCCCGCGC CTACGATCAG
TTCAGAAGTT TCAATAACGA TCTCGATAAG CACATCTATC TGCGCAACAT TCAAGACACC
AACGAGACCC TGTTTTATCG TTTAGTGCAA AACCACATCA GCGAAATGAT GCCAATTATC
TACACCCCGA CGGTAGGTTT GGCCTGTGAG CGCTTCTCGA AAAACTATCG CCGTAACCGT
GGTCTGTTCA TCTCCTACCC GAATAAAGAC AGAATCGACG ACATCCTCAA TAACTCGACT
CGCCAAAAAG TAAAAATCAT CGTTGTGACC GACGGTGAGC GCATCTTAGG CTTAGGCGAC
CAAGGTATTG GCGGCATGGG GATCCCTATT GGTAAATTGT CGCTCTACAC CAGCTGTGGT
GGGATCAGCC CCGCATACAC ACTGCCCATC ACCTTAGACG TAGGGACCGA CAATCCACAG
TTGCTGGAAG ACCCTATGTA CATGGGTTGG CGTCATCCAC GCATTGGCGG CGAAGAATAC
GCAGAGTTTA TCGAAGCCTT TATGCAAGCC GTGCATGTAC GTTGGCCAGA CACCCTGATC
CAATTCGAAG ACTTTGCCCA AAAGAACGCG ATGCCGATCC TTGAGCGTTA TAAGGAAAGA
TACTGCTGCT TTAACGATGA CATTCAAGGC ACTGCCGCAG TCACTGTTGG TTCATTACTC
GCCGCCTGTA AGGCCGCTGG CACTGAACTG AACAAACAAC GGGTTGCCTT CTTGGGCGCT
GGTAGCGCAG GTTGCGGTAT TGCCGAAGCC ATTGTCGCGC AAATGGTGTC AGAGGGTATC
AGCGACGAGC AAGCACGCAG CCAAGTCTGT ATGGTTGACC GCTGGGGCCT GCTGCTCGAC
AACATGCCTA ACCTGTTGCC ATTCCAGCAA AAACTGGCTC AAAAATGTGC CGATATCAGC
CACTGGAATA ACTTCAGCGA CAATATTTCA CTGCTCGATG TGGTCAATAA CGTTAAACCA
ACGGTGTTGA TTGGCGTATC GGGCGCACCG GGTCTGTTTA CTGAAGAGAT TGTTCGCGCA
ATGCATAGCC ACTGCGAACG TCCGATTATC TTCCCACTGT CAAACCCAAC TAGCCGCGTT
GAAGCAACGC CAAAAGACAT TCTGCACTGG ACTTCTGGCC AAGCATTAGT GGCAACGGGT
AGCCCGTTTG AACCTGTGGT TGTCGATGGC GAGACCTATG AAATCGCCCA ATGTAACAAC
AGCTTTATCT TCCCAGGCAT TGGTTTAGGT GTACTCGCCT CAGGTGCCCG CCATGTATCG
GATGCGATGT TAATGGCATC GAGCCGCGCA TTAGCCGAAT GCTCACCGTT AGCCATTAAT
GGCTCAGGGC CACTCCTGCC AAAACTGGAA GATATTCACT CAGTAAGTAA GCATATTGCG
TTTGCCGTCG GTAAAGTGGC GATTGAGCAA GGATTATCCT TGCCTGCGAG TGATGAGCTG
CTGATGCAAT CTATCGAAGA TAATTTCTGG AAGCCAGAGT ACCGCCGTTA TAAGCGTACA
TCTTTCTAA
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| Protein sequence | MDDNKRPLYL PFAGPAILEA PLINKGSAFS EEERIFFNLE GLVPYAIETI EEQASRAYDQ
FRSFNNDLDK HIYLRNIQDT NETLFYRLVQ NHISEMMPII YTPTVGLACE RFSKNYRRNR
GLFISYPNKD RIDDILNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG
GISPAYTLPI TLDVGTDNPQ LLEDPMYMGW RHPRIGGEEY AEFIEAFMQA VHVRWPDTLI
QFEDFAQKNA MPILERYKER YCCFNDDIQG TAAVTVGSLL AACKAAGTEL NKQRVAFLGA
GSAGCGIAEA IVAQMVSEGI SDEQARSQVC MVDRWGLLLD NMPNLLPFQQ KLAQKCADIS
HWNNFSDNIS LLDVVNNVKP TVLIGVSGAP GLFTEEIVRA MHSHCERPII FPLSNPTSRV
EATPKDILHW TSGQALVATG SPFEPVVVDG ETYEIAQCNN SFIFPGIGLG VLASGARHVS
DAMLMASSRA LAECSPLAIN GSGPLLPKLE DIHSVSKHIA FAVGKVAIEQ GLSLPASDEL
LMQSIEDNFW KPEYRRYKRT SF
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