Gene Shewmr4_3140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3140 
Symbol 
ID4253711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3759873 
End bp3760367 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content48% 
IMG OID638119782 
ProductDNA-binding transcriptional regulator AsnC 
Protein accessionYP_735268 
Protein GI113971475 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATTC ATTATGTTAT AGAGAGTTTA TTTATGGAAA CCGCATTTCA GCGCGATCAG 
CTTGATAACC ATATCCTCGA AGCCTTAATG CAAGACGCAC GCACCCCGTT TGCCGAGCTT
GCCAAACGTT TCGGCGTGAG TGCGGGTACT ATCCATGTGC GTGTCGAGAA AATGAAACAA
GCGGGGATTA TCACGGGTGC CCAGATCACC ATCAATCCCA AGGCACTAGG TTACGATGTC
TGCTGTTTTA TTGGAATTAA TCTCAAAAGT GCCGGCGACT ACCCCGCCGC CATCGCCAAG
CTAAACGCCC TAGAAGAAGT GGTAGAAGCC TACTACACCA CAGGCAACTA CAGCATTTTT
GTCAAAGTCA TGTGCCAATC CATCGATGGC CTGCAACACG TGCTGATTAA CCGCATCCAA
TCAATCGACG AAATTCAATC GACGGAAACC CTTATCAGCC TGCAAAACCC TATCACAAGA
GCGGTAAAGC CTTAG
 
Protein sequence
MTIHYVIESL FMETAFQRDQ LDNHILEALM QDARTPFAEL AKRFGVSAGT IHVRVEKMKQ 
AGIITGAQIT INPKALGYDV CCFIGINLKS AGDYPAAIAK LNALEEVVEA YYTTGNYSIF
VKVMCQSIDG LQHVLINRIQ SIDEIQSTET LISLQNPITR AVKP