| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3129 |
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| Symbol | |
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| ID | 4253700 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3745689 |
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| End bp | 3747338 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638119771 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_735257 |
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| Protein GI | 113971464 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTT CCTCCCTAGG TTTATCTGCA CCGATCCAAA AAGCCGTGAC TGAACAAGGT
TATGACACAC CCTCTCCTAT TCAAGCACAG GCGATTCCCG CCGTACTGAC GGGTAAAGAC
GTGATGGCTG CGGCCCAAAC GGGGACAGGA AAAACCGCAG GCTTTACCCT GCCGTTGCTC
GAATTACTCT CTAAAGGCAA TAAAGCCAAG GTGGGACAAA TCCGCGCCCT AGTGCTAACC
CCCACGCGCG AGTTAGCGGC TCAAGTAAGC GAAAGCGTTG AAACCTATGG TAAATATCTG
CCATTGCGCT CAGCGGTCGT CTTTGGTGGC GTGCCAATTA ATCCCCAAAT TCAAAAGCTA
CGCCACGGGG TAGATGTACT GGTCGCCACA CCTGGACGAT TATTAGATCT TGAGCAGCAA
AAAGCGGTGA AGTTTAATCA ACTCGAAGTC TTAGTGCTGG ATGAAGCGGA TCGCATGCTC
GACATGGGTT TTATCCGCGA TATCAAAAAG ATCCTCGCCA TGTTGCCCGC TAAACGACAA
AACCTGATGT TTTCGGCGAC CTTCTCCGAT GAAATCCGCG AGCTGGCCAA AGGCCTAGTG
AATCAACCAG TAGAAATTTC AGTTACGCCA CGCAACGCCG CGGCAAACAC AGTCAAACAA
TGGATTTGCC CCGTCGATAA GAATCAAAAA TCGGCGCTGC TAATTCAGCT CATCAAGCAG
GAAAACTGGC AGCAAGTCTT AGTGTTTTCA CGCACTAAAC ACGGCGCCAA CAGACTGGCT
AAGAGTCTTA TTCAAGCCGA GATCAGCGCC GCCGCTATCC ACGGCAATAA GAGCCAAGGC
GCACGCACCA AAGCCTTAGC CGACTTTAAG AGTGGCGAAG TGCGCGTGCT AGTGGCGACC
GATATTGCGG CGCGCGGGCT CGATATCGAC CAATTACCAC AAGTAGTGAA CTTCGATCTG
CCCAATGTCC CCGAGGATTA CGTACACCGC ATTGGCCGCA CCGGCCGTGC TGGCGCCTTA
GGCCAAGCCG TATCCTTAGT CAGTAGCGAA GAAACTAAGC TGCTCAGGGA CATTGAGCGT
TTGATCAATC GCGTGCTTGA AAGGCAGGAG GTTGAAGGCT TCAGCCCTGT GCATGCGCTC
CCCGAATCGA CCTTAAATGC CCATGGTAAA GAGAACAAAA TCAAAGCCGT GGCGAGCCAA
CGTAAGCATC GCAGCGCGGG TAAACCCTCG CCAAGAGCCG GTACAGGCCG CGATGGTCGT
AAAACGCCAG ACAGCAGCGA CGGCGCTGCG CAGCAAAAGA ACTCAAATCC AAACCAAGGC
CAGCGCAATA ATCAGGGGCA GCATAAGCGT CCTCAAGCGC CAAAAAACGC TGAGCATAAA
AACACGCACT CAAGTACCGA AGCTGGCCGC ACGCCAAAAC CACAGGATAA ACGTCCTCCG
CGCGGCAAAG GCCCGGCTAA TAGCGAACAT AAAGCCAAAG GCCAGCCTCA TTCAGCGGCG
CAACAACTTA GTCCACAGGC TCGCAGCGAA AAACAACATT CTGACTCACG CCGCCAAGGC
CGCGCTCAGC CGAATGCTAA TCCCGCCAGC GGTGAACACA AAAAGCCCTC GCATCGACCC
GATAACCGCC CTAATCGCGT AAAATCCTAA
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| Protein sequence | MSFSSLGLSA PIQKAVTEQG YDTPSPIQAQ AIPAVLTGKD VMAAAQTGTG KTAGFTLPLL
ELLSKGNKAK VGQIRALVLT PTRELAAQVS ESVETYGKYL PLRSAVVFGG VPINPQIQKL
RHGVDVLVAT PGRLLDLEQQ KAVKFNQLEV LVLDEADRML DMGFIRDIKK ILAMLPAKRQ
NLMFSATFSD EIRELAKGLV NQPVEISVTP RNAAANTVKQ WICPVDKNQK SALLIQLIKQ
ENWQQVLVFS RTKHGANRLA KSLIQAEISA AAIHGNKSQG ARTKALADFK SGEVRVLVAT
DIAARGLDID QLPQVVNFDL PNVPEDYVHR IGRTGRAGAL GQAVSLVSSE ETKLLRDIER
LINRVLERQE VEGFSPVHAL PESTLNAHGK ENKIKAVASQ RKHRSAGKPS PRAGTGRDGR
KTPDSSDGAA QQKNSNPNQG QRNNQGQHKR PQAPKNAEHK NTHSSTEAGR TPKPQDKRPP
RGKGPANSEH KAKGQPHSAA QQLSPQARSE KQHSDSRRQG RAQPNANPAS GEHKKPSHRP
DNRPNRVKS
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