| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3126 |
|---|
| Symbol | |
|---|
| ID | 4253697 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3740296 |
|---|
| End bp | 3742047 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638119768 |
|---|
| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
|---|
| Protein accession | YP_735254 |
|---|
| Protein GI | 113971461 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4987] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02868] thiol reductant ABC exporter, CydC subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAC TCCTTCCCTT TATTCGGTTG TTCTCCCACC AATGGTTGAT GATGGCCGTT
GGGCTTGTAC TCACCCTAAC CACACTCATG GCGGGGATTG GTTTATTGTC GCTGTCGGGT
TGGTTTTTAT CGGCGACGGC GGTGGCGGGA TTAACGGTTA TCGGCTCCCA ATCCTTTAAC
TTTTTTACTC CCGCAGGTGG CGTGCGTTTT CTTTCTATCG CGCGAACGGC CAGTCGTTAC
GGTGAGCGCC TCGCGACCCA TGAGGCGACC TTTAAATTAC TGACTGAACT CAGAGTGTGG
GCGTGGCGAA AACTCTTCCC ACTTAGCGCT AAAAATCTGC AGGGTCTGCG CCGTGCGGAT
ATGCTAAACC GCCTCGTGGC GGATATAGAT ACACTCGACC ATCTGTATTT ACGATTGTTG
ACGCCGATGG CGGCTTCCTT GCTGATGACG GCGTTGTTAT ATCTGTTCCT CGCATGGTTT
GATGCCAAGC TGGCCTTAAG TTTATGCCTG TTTTTAGTGG TGGTTTGGCT GCTGCTACCA
TTGCTGTTTT ATCGGCTTGG GCATGAGCCA AGTCGCAATA TGTTGGAGAC CAAACGCCAA
TATCGGGTGC AGTTGCTTGA GATGCTGCAG GGCCAAGCTG AGCTGAGTTT ATTTGGTGCG
AACGCCAGAT ACAGACACAA GCTCGATGAG GCCGAGCAGG CGTTATTTGC CAGCCAAGGG
GCGATGGCGA ATATCACCGC CTTGAGCCAA GCCATGCTGA TCCTCGCGAC AGGCTCGGCA
CTCATCATGA TGCTATTTTT AGCCGCCAAT GGCGTGGGCG ATGCCGTGCC TCCCGGCCCT
ATGTTTGCCT TGATGGTGTT TGCCACTATG GCCTGCGTCG AAATGATGAT GCCAATCGCG
GGTGCTTTCC AACATTTGTC GGGCTGTGTG CTGGCGGCGA CACGAATTCA CGAAATCACC
GAGCAAGAAA GCGATATTCG TTTTAGCGAA GATTCAACGC TTAAGGCGAC ATCGGGCGGG
CTGCAGATGA CGGATATCCA TTTTGGCTAT CACGATAACC AGAGCGTACT GCAGGGCTTA
TCCTTAACGG TAGAGCCCGG GCAAAAGGTG GCGTTATTGG GCGCAACGGG CTGCGGTAAA
TCCAGTTTAT TGTCCTTAAT CACCCGTGAA TGGCAGGCGC AGCGTGGCCA AATTTGCCTA
GATGGTCAGC CGCTGACGGA CTATAGCGAG GCTGCCTTAA GATCGGCGAT GACAGTCGTG
AGCCAGCGAA TTTACCTGTA CGCGGGCACG CTGCGGGAGA ACCTTGCTAT TGCCTTGCCT
GTGCCAGAAG GGCAAAAGCG TACCGCTAAT GACGAGCGTT TTATCCAAGT ATTACAGCAG
GTTGGTTTAG GCGAATTACT TAAAGGCGAC AAGCCTCTCG ATATGTGGAT TGGTGAGGGC
GGCCGGCAGT TATCGGGCGG TGAGCAGCGC CGTATTGGCG TGGCAAGGGC ATTGCTCCGT
GATGCGCCTT TGTTACTGTT AGATGAGCCA ACCGAGGGCT TAGATAAGCG CACCGAGCGG
GAGATCTTAA GTTTACTGCT TGAATTCGCA AAGGATAAAA CCCTGCTAAT GATCAGCCAT
CGATTAACGG CGATGGCCAA GATGGACCAA ATTCACCTCC TCGCCGAGGG GCAAATTGTG
GCATCGGGCG ATCATCAGCA GTTACTTCAA ACTTGCCCCG CCTATCAGGC GCTCTATCGT
CGCTTAGCTT AA
|
|---|
| Protein sequence | MKILLPFIRL FSHQWLMMAV GLVLTLTTLM AGIGLLSLSG WFLSATAVAG LTVIGSQSFN
FFTPAGGVRF LSIARTASRY GERLATHEAT FKLLTELRVW AWRKLFPLSA KNLQGLRRAD
MLNRLVADID TLDHLYLRLL TPMAASLLMT ALLYLFLAWF DAKLALSLCL FLVVVWLLLP
LLFYRLGHEP SRNMLETKRQ YRVQLLEMLQ GQAELSLFGA NARYRHKLDE AEQALFASQG
AMANITALSQ AMLILATGSA LIMMLFLAAN GVGDAVPPGP MFALMVFATM ACVEMMMPIA
GAFQHLSGCV LAATRIHEIT EQESDIRFSE DSTLKATSGG LQMTDIHFGY HDNQSVLQGL
SLTVEPGQKV ALLGATGCGK SSLLSLITRE WQAQRGQICL DGQPLTDYSE AALRSAMTVV
SQRIYLYAGT LRENLAIALP VPEGQKRTAN DERFIQVLQQ VGLGELLKGD KPLDMWIGEG
GRQLSGGEQR RIGVARALLR DAPLLLLDEP TEGLDKRTER EILSLLLEFA KDKTLLMISH
RLTAMAKMDQ IHLLAEGQIV ASGDHQQLLQ TCPAYQALYR RLA
|
|---|
| |