| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3112 |
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| Symbol | |
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| ID | 4253683 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 3724464 |
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| End bp | 3726197 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119754 |
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| Product | spermidine synthase |
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| Protein accession | YP_735240 |
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| Protein GI | 113971447 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.132702 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGAAT CCCAAACAAC TGGCTCAGCG ACTCAAGCGG TAAAAACGAG TCGCCTAAGC
TGGTTCGATG ATGTCCTACT ATTGGGCATT ATGGCCGTAC TCGCTGGGTG CGGCCTGATC
TACGAATACC TGTTGTCCCA CTACGCAGGC CGGATCTTAG GCGCGTTAGA AGCCGCCATT
TACACTATGA TCGGCCTGAT GATCGTCTCC ATGGGTCTTG GCGCCTTTGC CGCTCGCAAA
ATTAAAGATG CCTTTACCGG CTTTGTGGTG CTCGAACTCA CGGTCGCGCT CTGTGGCTCG
CTGGCGATTT TAATTACCGC TGCCGTGATA GGTTTGGGTC AGCAGCTGCC GATGCTTATC
GCCTCCACCT TAGGCTTACC ACCGGATCAA CTGCCTGAAG GTGGCATGGT TGGTTCGCTA
CAAAAGCTGA GCGAATATCT GCCCTATATC TGGGGCGTTT CGCTCGGCTT GATGATCGGG
ATGGAAATTC CGCTGATCGC GAGGGTGAGA CAATCCCTTT CTGACGAGCA TTTACTCCAC
AACGCGGGGA CGATTTACGG CGCCGACTAT ATTGGCGCAG GCATTGGCGC GGCTATTTGG
GTCGGCTTTA TGCTGGCCAT CGATATTCAA CTCGCTGCCG CGCTGACCGC CAGCTTTAAC
TTGCTCGCCG GCTTTGTGTT TATCTGGCGT TTTTGGCCCA AGATCCAAAG GGCAAAATTA
TTGCTCGCAG GGCATTTTGT GGTCACGGGC GTATTATTGC TGCTCGCCAT TCAAGGGCCG
AGTTGGGAGC TGCAGTTCAA CAATCTGCTC TATAAAGACA AAGTGGTTTA CGCTAAGGCC
ACGCGTTTTC AACAACTCAC CTTTACCGAG CGCTTACGCG GCAATGGCCT CTCCCCCATA
TACTCTTTGT ATATCAATGG CCGATTACAG TTTTCGAGTA TCGATGAGCA TATCTACCAT
GCGTTTTTAG TTCACCCAAC GCTTGCGGCC AGCGCTCGCC ATAACAAAGT ATTAATCATT
GGTGGTGGTG ATGGTCTGGG CCTAAAGCAA GTGCTGCGTT GGGAGCCTGA GCAAGTGACC
TTGCTCGATC TTGATGCCGC ATTGGTGCAA CTCTTTAAAA CGCCCGATAC GGATATGCCT
AAGCGTCTAA GCCAAGCCCT GTTAGCCCTC AATGGCAATG CCTTTAACGA TCCTCGCGTT
AAGGTGATCC ACGACGACGC CTTTAATGGG GTCGATAAAT TGATTGCCGC AGGAGATAAA
TACGATGCCA TTATTGTGGA CTTGCCCGAT CCTAGCCATC CCGATTTAAA TAAGCTCTAT
TCGGATTATT TCTATCGCAA GCTCAAGGAA CTAATGAGCA GTGATGGCGC TCTGACTGTA
CAGTCAACCT CGCCCTATCA CGCGCAAAAG GCCTTTATCT CGGTCGCGAA AACCTTGGCT
TTAGCGGGGT TTGACGTAAA ACAGTATCAC CATAACGTCC CAAGCTTTGG AGAATGGGGC
TGGAGCATTG CCACCCTATC GGGAAAAGAT GCCCAGCATC GCCTAGGCGA GCTGACAACA
CTACCGATAG CGGATGACTG GTTAACCTTA GGTTTAGTCA AAGGCGCCTT TGAATTTCCT
GCCAATTTTT ATCAGGACGC CGCCAATATT AAGCCTAACG AACTGGGTTC GTTGCAGTTG
TACCATTATC ATCAACAGGC ATGGTCCGAA ACCCAAGGAC TGGATCTTTT TTAA
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| Protein sequence | MHESQTTGSA TQAVKTSRLS WFDDVLLLGI MAVLAGCGLI YEYLLSHYAG RILGALEAAI
YTMIGLMIVS MGLGAFAARK IKDAFTGFVV LELTVALCGS LAILITAAVI GLGQQLPMLI
ASTLGLPPDQ LPEGGMVGSL QKLSEYLPYI WGVSLGLMIG MEIPLIARVR QSLSDEHLLH
NAGTIYGADY IGAGIGAAIW VGFMLAIDIQ LAAALTASFN LLAGFVFIWR FWPKIQRAKL
LLAGHFVVTG VLLLLAIQGP SWELQFNNLL YKDKVVYAKA TRFQQLTFTE RLRGNGLSPI
YSLYINGRLQ FSSIDEHIYH AFLVHPTLAA SARHNKVLII GGGDGLGLKQ VLRWEPEQVT
LLDLDAALVQ LFKTPDTDMP KRLSQALLAL NGNAFNDPRV KVIHDDAFNG VDKLIAAGDK
YDAIIVDLPD PSHPDLNKLY SDYFYRKLKE LMSSDGALTV QSTSPYHAQK AFISVAKTLA
LAGFDVKQYH HNVPSFGEWG WSIATLSGKD AQHRLGELTT LPIADDWLTL GLVKGAFEFP
ANFYQDAANI KPNELGSLQL YHYHQQAWSE TQGLDLF
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