| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3108 |
|---|
| Symbol | |
|---|
| ID | 4253679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3718420 |
|---|
| End bp | 3719391 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638119750 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_735236 |
|---|
| Protein GI | 113971443 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAC CTCCCATTCC TGAGAATGAG TTACAACGTT TAGCCACCCT GAGGGCGCTG
AATGTACTCG ATACCGATGC CGAGGAAAGA TTCGACAGGA TCACTCGGCT AACGCGGCGG
ATCTTTGCCC TGCCGATTTG CGTGGTGACC CTAGTCGACG CGAATCGTCA GTGGTTTAAG
TCTCGCCAAG GGTTAGAGGT GACTGAAACT CCAAGGGATA TTTCCTTTTG CGCCCATGCT
ATTAACCATG ATGGCGTGTT TATCGTTAAC GATGCCCTCA AGGATCCCCG TTTTTTCGAT
AACCCCTTAG TTACCGAGCC TCCGCATATC CGGTTTTATG CGGGTTATCC TCTTACCATT
CAAGGGGAAT ATCGGGTCGG GACGCTGTGT TTAATCGGCA ATGAGCCGCG GGAGTTTAGC
GACGATGACA TTGAAACCTT AACGGATCTG GGGCAAATGG TTGAAGCCGA ACTGCTGTTT
ATCGCGCAAA ATACCTTAGA TCCGCTCACC ATGATCTCTA ATCGGCGTGG GTTTGAACTG
CTAGCCTATC AATCTCTTGC CAGTTGTCGA CGTACTAACG CAAAAGCGGC GTTAGTGTTT
TTTGACCTCG ACTTTTTTAA AGAAGTAAAC GACAGCTTTG GCCATCGTAA GGGCGACCAA
GTGCTCTATG ATTTTGCCCA TATTTTAATG GCAGCGTTTA GAGAGTCCGA TGTGATAGCC
AGATTGGGCG GAGATGAGTT TGTGGTGCTG CTCAGTTTTG TGCAGCCTGA TACCGTCAGT
TTTGCCATCG AGCGTTTTAA GTTATTGCTT GAGCAATATA ATCAGCAACG TCCGCAGCAA
CGCCCGTTAG AAACCAGTAT CGGTGTTGCC CATTGGTCGC CAGAATCCGA TATGAACCTT
GAGGATTTAC TCGATACCGC CGACCGGGCT ATGTATGAAA ACAAAGCCTT ACACCACTTG
GATAAGCCCT AG
|
|---|
| Protein sequence | MQLPPIPENE LQRLATLRAL NVLDTDAEER FDRITRLTRR IFALPICVVT LVDANRQWFK
SRQGLEVTET PRDISFCAHA INHDGVFIVN DALKDPRFFD NPLVTEPPHI RFYAGYPLTI
QGEYRVGTLC LIGNEPREFS DDDIETLTDL GQMVEAELLF IAQNTLDPLT MISNRRGFEL
LAYQSLASCR RTNAKAALVF FDLDFFKEVN DSFGHRKGDQ VLYDFAHILM AAFRESDVIA
RLGGDEFVVL LSFVQPDTVS FAIERFKLLL EQYNQQRPQQ RPLETSIGVA HWSPESDMNL
EDLLDTADRA MYENKALHHL DKP
|
|---|
| |