| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3070 |
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| Symbol | |
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| ID | 4253641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3668596 |
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| End bp | 3670320 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638119712 |
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| Product | TrkA domain-containing protein |
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| Protein accession | YP_735198 |
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| Protein GI | 113971405 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.748598 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGACT TGTGGCTATT AGCTATTGTG TTGTTTGGAT TAGTGGCTGG CTTAATCGCC
GGCCGCATTA ATCCCGCTGT GTTGTTTTTA TTTGCTTTTT TACTCTGTTA CCTCCTAGGA
ATGGTATCAC TCGACACGGC GCTCACTAGC TTTACCAACA CAGGTTTAGT CACACTGGTG
TTATTGGTAC TGGCGGCGAC GGCGCTGGAG AAAACCTCAC TGCTGGGCAA GTTAAGCCAA
GTGATTGGTA ACAGCTCGCT TGCGGTGACG ATGGCAAAAC TGGGATTTTC AACGGCGCTG
CTGTCCTCTT TTACCAATAA CACCGCGGTC GTCGCATCTT TGATTGGAGT GGTGCGCCGT
AATCAGGCTC ACGCTCCGGC TAAGTTGTTA CTGCCGCTCA ACTATGCGGC GATTTTGGGC
GGTACGCTGA CCTTAATTGG CACTTCCACA AACCTCATTG TCAACTCGTT TGTCGAAAAC
GCTGGCTTGC CAGCGCTGGG ATTCTTTGAG TTCACCCCAG TGGCCATGCT GATTGTGCTC
TTAGGCATAG TGCTGCTGAT TGTGCTGGCC AATACCTTGC CCGACAGGCG GGATGAATCG
ACTGAGGAAG CGTTGCCCTA TCTGCTAGAA GCTCACGTGG CCAAAGGCTC GTCTTTAGTC
GGTCGCAGCG TGGTGGATAA CAAATTAAGA GCCCTGAAAA AACTCTATTT AGTTGAGCTT
GAGCGAAGCG GCATTTGTAT TTGCCCTGTC CCGCCCCAGT TAGTGCTACA GGCGGACGAT
GTGCTGCGTT TCAGTGGCGC TGTGGAGTCG GTGGAATTGT TACATCAATT CGATGGTCTC
GATTGGTTTG GAAAACATCA AGCCAAGGGG CAAAATCTGG TCGAAGCTGT GTTAGCGCCT
TCGTCGAGTC TGGTGGGCAG CACCTTAAAA GAATCCCGCT TTCGCGAGCA GTTTGATGCG
GCGGTGATGG CGATTCGCCG TGGCCACCAT CCGCTAAAGG GCGGCTTGGG CGATATCGTA
TTACAGCCGG GTGATGTGTT GCTGTTGACG CCGGGGGATG GGTTTAGTGC TAATCCAAAA
CTCGGTACCG AATTTGCGGC GGTGAGCGGA CTCGATTTGA ATGTGCGGTT AGACACTAAG
CGTAGTCGTA TCGTGTTAGC CGGATTTGTG TTGACGATTG GCCTGAGTCT GGCGGGGATT
TTACCCTTAG CCAAAGGACT GGTGCTGTTA TTACTCAGCT ATTTTGCCAT TGGCGCCGTG
ACCTTATCTG AACTTAAGCG CCGCTTTCCG CTCGAGTTAG TCGTGATTGT GGGCAGTGCT
TTGGGACTGG CAAACCTGAT GATGAGCACA GGTCTTGCCG ATGGTTTAGC CCAGGGATTG
CTTGGTGCCA TCAATGGCTA CGGGGTATTT GGTGCCTTTG TGGGCGTTTA TTTAGTCACA
CTGCTGCTGA CAGAACTCGT GACCAATAAT GCCGCAGCGG CCTTAGCCTT TCCGATTGCC
TATGCGGTAG CGCTGAATTA TGGCGTCGAT CCTCGGCCGT TTATCATGGC CGTGGTGTTT
GGTGCCAGCG CCAGTTTTAT TTCGCCCTAT GGTTATCAAA CCAACTTGAT GGTGTTTAAT
GCGGGGAACT ATCGTTTCAG TGACTTTGTG CGCTTAGGGC TACCCTTATC CCTGCTGTAT
TCGCTAATCG TGATTTTTAT GGTGCCAGTT ATCTTTCCGT TTTAA
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| Protein sequence | MSDLWLLAIV LFGLVAGLIA GRINPAVLFL FAFLLCYLLG MVSLDTALTS FTNTGLVTLV
LLVLAATALE KTSLLGKLSQ VIGNSSLAVT MAKLGFSTAL LSSFTNNTAV VASLIGVVRR
NQAHAPAKLL LPLNYAAILG GTLTLIGTST NLIVNSFVEN AGLPALGFFE FTPVAMLIVL
LGIVLLIVLA NTLPDRRDES TEEALPYLLE AHVAKGSSLV GRSVVDNKLR ALKKLYLVEL
ERSGICICPV PPQLVLQADD VLRFSGAVES VELLHQFDGL DWFGKHQAKG QNLVEAVLAP
SSSLVGSTLK ESRFREQFDA AVMAIRRGHH PLKGGLGDIV LQPGDVLLLT PGDGFSANPK
LGTEFAAVSG LDLNVRLDTK RSRIVLAGFV LTIGLSLAGI LPLAKGLVLL LLSYFAIGAV
TLSELKRRFP LELVVIVGSA LGLANLMMST GLADGLAQGL LGAINGYGVF GAFVGVYLVT
LLLTELVTNN AAAALAFPIA YAVALNYGVD PRPFIMAVVF GASASFISPY GYQTNLMVFN
AGNYRFSDFV RLGLPLSLLY SLIVIFMVPV IFPF
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