Gene Shewmr4_3058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3058 
Symbol 
ID4253629 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3656107 
End bp3657048 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content44% 
IMG OID638119700 
Productnucleotide-binding protein 
Protein accessionYP_735186 
Protein GI113971393 
COG category[K] Transcription 
COG ID[COG4271] Predicted nucleotide-binding protein containing TIR -like domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000916186 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.00191889 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTTTATCG CATATTACTT GGTTAGTTAC ATGGCTGATT TAACCACACT AGAAAAGAAG 
AAATTAGAAC GCTACTTCGG TATGGAGAGC GGGTACTTTA GTAATTTTTC CAATAACTCT
CTAGAGCTAT TCGTTGCGGA GCACTTAAGC ATCGAGATCT ATGACGAAAA GTACAACCTT
GGGTCTGGTT CAAAAGCAAA CAGAGTAAGA GCCTTGTGGC AACTAGAAAG CAACGATGTC
ATTGCGAAAT TTCTCACTGC AGTCATGGAA CAGGATGACT TTGAGAAAGA TAATTCTTAC
TCATACACTG GCAATACCAA TGAGACTTTG AAACAAGAGT GCTTAGAAAT TATTGCGAGA
CTCCAAGGAA CCACACCGCA ACCGCAACCG CAACCGCAAC CGCAACCGCA ACCGCAACCG
CAACCGCAAC CGCAACCGCA AAATTCGATC ACTGAACCAG CACAAGCGCA AGCATTTAAT
TGGTCAACAC CTCCGATGAA AAAGAAAGTA TTCATAGTTC ATGGTCATGA TGAGCTAACT
AAAGAAAAGG TAGCTAGATT TATTTCCCAA GTAGGCTTAG AGCCAATTAT CTTGCATGAA
CAAGTTAGTG GAAGCCAGAC GATCATCGAA AAAATTGAAC GTTACGCTGA CCAAGTCTGC
TTTGCTATCG TACTGTACAC TCCTTGTGAT AGAGGCGCGA AAGCCAGTGA AAGAACACCT
ATGTTCCGAG CTAGGCAGAA TGTCGTTTTT GAACATGGAT ATTTCATCGC TAAGCTGGGA
CGAAGCAAAG TTACAGCCAT CGTGAAAGGT AACATAGAGC TACCAAATGA CTTTAGCGGA
GTGGTATACG TTCCATTCGA TGAGAGTGAG GCGTGGAAAC TATCACTAGC TCGTGAAATG
AAAGGTGCTG GGTGCGAAAT CGACCTCGCA GCCCTAGTCT AA
 
Protein sequence
MFIAYYLVSY MADLTTLEKK KLERYFGMES GYFSNFSNNS LELFVAEHLS IEIYDEKYNL 
GSGSKANRVR ALWQLESNDV IAKFLTAVME QDDFEKDNSY SYTGNTNETL KQECLEIIAR
LQGTTPQPQP QPQPQPQPQP QPQPQPQNSI TEPAQAQAFN WSTPPMKKKV FIVHGHDELT
KEKVARFISQ VGLEPIILHE QVSGSQTIIE KIERYADQVC FAIVLYTPCD RGAKASERTP
MFRARQNVVF EHGYFIAKLG RSKVTAIVKG NIELPNDFSG VVYVPFDESE AWKLSLAREM
KGAGCEIDLA ALV