Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3058 |
Symbol | |
ID | 4253629 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3656107 |
End bp | 3657048 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638119700 |
Product | nucleotide-binding protein |
Protein accession | YP_735186 |
Protein GI | 113971393 |
COG category | [K] Transcription |
COG ID | [COG4271] Predicted nucleotide-binding protein containing TIR -like domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000916186 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00191889 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTTATCG CATATTACTT GGTTAGTTAC ATGGCTGATT TAACCACACT AGAAAAGAAG AAATTAGAAC GCTACTTCGG TATGGAGAGC GGGTACTTTA GTAATTTTTC CAATAACTCT CTAGAGCTAT TCGTTGCGGA GCACTTAAGC ATCGAGATCT ATGACGAAAA GTACAACCTT GGGTCTGGTT CAAAAGCAAA CAGAGTAAGA GCCTTGTGGC AACTAGAAAG CAACGATGTC ATTGCGAAAT TTCTCACTGC AGTCATGGAA CAGGATGACT TTGAGAAAGA TAATTCTTAC TCATACACTG GCAATACCAA TGAGACTTTG AAACAAGAGT GCTTAGAAAT TATTGCGAGA CTCCAAGGAA CCACACCGCA ACCGCAACCG CAACCGCAAC CGCAACCGCA ACCGCAACCG CAACCGCAAC CGCAACCGCA AAATTCGATC ACTGAACCAG CACAAGCGCA AGCATTTAAT TGGTCAACAC CTCCGATGAA AAAGAAAGTA TTCATAGTTC ATGGTCATGA TGAGCTAACT AAAGAAAAGG TAGCTAGATT TATTTCCCAA GTAGGCTTAG AGCCAATTAT CTTGCATGAA CAAGTTAGTG GAAGCCAGAC GATCATCGAA AAAATTGAAC GTTACGCTGA CCAAGTCTGC TTTGCTATCG TACTGTACAC TCCTTGTGAT AGAGGCGCGA AAGCCAGTGA AAGAACACCT ATGTTCCGAG CTAGGCAGAA TGTCGTTTTT GAACATGGAT ATTTCATCGC TAAGCTGGGA CGAAGCAAAG TTACAGCCAT CGTGAAAGGT AACATAGAGC TACCAAATGA CTTTAGCGGA GTGGTATACG TTCCATTCGA TGAGAGTGAG GCGTGGAAAC TATCACTAGC TCGTGAAATG AAAGGTGCTG GGTGCGAAAT CGACCTCGCA GCCCTAGTCT AA
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Protein sequence | MFIAYYLVSY MADLTTLEKK KLERYFGMES GYFSNFSNNS LELFVAEHLS IEIYDEKYNL GSGSKANRVR ALWQLESNDV IAKFLTAVME QDDFEKDNSY SYTGNTNETL KQECLEIIAR LQGTTPQPQP QPQPQPQPQP QPQPQPQNSI TEPAQAQAFN WSTPPMKKKV FIVHGHDELT KEKVARFISQ VGLEPIILHE QVSGSQTIIE KIERYADQVC FAIVLYTPCD RGAKASERTP MFRARQNVVF EHGYFIAKLG RSKVTAIVKG NIELPNDFSG VVYVPFDESE AWKLSLAREM KGAGCEIDLA ALV
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