Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3053 |
Symbol | |
ID | 4253624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3652609 |
End bp | 3653343 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638119695 |
Product | extracellular solute-binding protein |
Protein accession | YP_735181 |
Protein GI | 113971388 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000807518 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0316275 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CCATGTTATT AGGCGGCCTA GCCCTCACTG CCACCTTGTT GTTAGCTGGA TGTGGGAAAA GCAACGATGT TTTAGTGGTT GGCACCAATG CGGCCTTCCC GCCCTTTGAA TATGTTGGCG GACAAAGTGG CGACGAAATC AAAGGCTTCG ATATTGAGCT TGCCAAACAA ATCGCTAAAG ATGCCGGCAA GACGCTCAAA GTCGAAAACA TGAAATTCGA TTCACTGATC GTAGCGCTAA ACTCAGGCAA GATTGATTTT ATCGCCTCGG GCATGACCAT CACCCCTGAG CGCCAAGCCA GCGTTAACTT TTCGGAGCCC TATTACGAGG CGACTCAAGT GCTACTCGTG AATAAAGATA ACGACACCAT TCATACCCTT GATGACATTA AAGACAAACA CTTTGCGGTG CAGCTCGGCT CAACCGCCGA TATGATGTCT AAAAAATACA CCCAAAATGT CACCGCTTTT AACACAGGCT TCGAAGCCAT TATGGAACTG AAGAATGGCA AAGTCGACTT AGTGCTATTC GATAGCGAGC CTGCGGCGAA CTATCTGGCG AAAAACCCGG ATCTCAAACT GATCAAGCTG GATTTCCCCC CAGAGTTTTA TGGCTTTGCG GTATCAAAGC AGCAGCCAGA ACTTCTCAAT AGCATTAATA ACACGCTGAA AAACTTGAAA GAAAGCGGCC AATATCAGGC GCTCGTTTCA GCCCATATCA AGTGA
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Protein sequence | MKKSMLLGGL ALTATLLLAG CGKSNDVLVV GTNAAFPPFE YVGGQSGDEI KGFDIELAKQ IAKDAGKTLK VENMKFDSLI VALNSGKIDF IASGMTITPE RQASVNFSEP YYEATQVLLV NKDNDTIHTL DDIKDKHFAV QLGSTADMMS KKYTQNVTAF NTGFEAIMEL KNGKVDLVLF DSEPAANYLA KNPDLKLIKL DFPPEFYGFA VSKQQPELLN SINNTLKNLK ESGQYQALVS AHIK
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