Gene Shewmr4_3050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3050 
Symbol 
ID4253621 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3649960 
End bp3650394 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content46% 
IMG OID638119692 
ProductLrgA family protein 
Protein accessionYP_735178 
Protein GI113971385 
COG category[R] General function prediction only 
COG ID[COG1380] Putative effector of murein hydrolase LrgA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00119689 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0263199 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTTCC TACAAGCCGC AATACGTCGA TGCCGTCATG GGGCTTTATT GTTAACTCAA 
ATTGGCCTCT TTTGTTTATT GTCTTTAGCC TGCCATTGGT TAGCCACTTG GGCGCATTTA
CCTGTGCCAG GTAGTGTTTT AGGTTTAGGT ATCTTACTGA TTTTACTTGC GACTAAGCTA
ATACCTGAAA ATGCGGTGCA GCTTGGTGCC GCTTGGTTGA TTGGTGAGTT GCTGCTGTTT
TTTATTCCGC CAGTGATCTC TGTTATCAAG TACGAAGGCC TGTTTGAGCA ATATGGGGTG
AATATTCTCT TCACCTTAGT CATGGGCAGT GTGTGCGTGA TGGTGGGTAC GGGATTTGTG
GTTGACCGAG TATTTCGTTT CGAGCGTCAA CTCAATATCA AAAAGCATGC ACGTCGCCAT
GCTAAGGCCG CCTAA
 
Protein sequence
MSFLQAAIRR CRHGALLLTQ IGLFCLLSLA CHWLATWAHL PVPGSVLGLG ILLILLATKL 
IPENAVQLGA AWLIGELLLF FIPPVISVIK YEGLFEQYGV NILFTLVMGS VCVMVGTGFV
VDRVFRFERQ LNIKKHARRH AKAA