| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3046 |
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| Symbol | mdoD |
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| ID | 4253617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3644930 |
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| End bp | 3646744 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119688 |
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| Product | glucan biosynthesis protein D |
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| Protein accession | YP_735174 |
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| Protein GI | 113971381 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000732267 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.185455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGATT CTGGCGAACT GATGGAGATA GAGGTATGGT TATCACTGTC ATCAACAGTT
CTCCACAGGG CAGTCACTGC AATATTGCTT ACTTTTGCAG AGAAGTGTCA GGAAGTTACA
CCAAATCAGA GTCTGCTTAT GCAACCCAAT TTATTTCCCG AACAAAGACA TTTAAATCGT
GAGCCGATGG TGATGCCGTC GGTGGAAGCT CAGTCTACCC GTAGCCGTTT ACAACGCATT
GTGGGCAGTG TACTACTCAC TTGCAGCGTG TTGTTAAGCT TATCTGCTTG TGCAGCGGGT
AAGGCGAGCG CACCGCAGGA AGAAGAGTTT AGCTACGCCT GGTTGAAAGG CTATGCCCAT
ACGCTGGCGA CTGAGTCCTA TGTGAGCCAT AAGGGCGAGT TGCCAAAAAG CTTACAGGGC
ATGAGCTGGG ATGATTACCA GCAGTTCCAT TTCAAGAAAA AAGCCGCCCT GTGGCGTGAG
GATGATTCGG AGTTTCGCGC CGAGTTATTC CACTTAGGCT TGTACTTCGA TACGCCTGTG
CATATTTACC AATTGGAAAA TGGCAAGGCT AAGCTTATCG AATATTCGTC TTCCATGTTC
GATTACGGTA AATCCAAGGT AAAGGGTAGC CAACTACCGA AAGACCTAGG CTTTGCTGGG
TTTAGAATGC AGTTTAATAC CGACTGGCAG CGTGACGTGG TCGCCTTCTT AGGTGCCAGC
TATTTCCGCG CCGTAGGTCA AGAAATGCAA TATGGTCTAT CTGCCCGTGG TTTAGCGGTC
GACACTGCGC TGCCTAAGCC TGAAGAATTT CCTATGTTTA CCCGTTTCTG GTTAGAGAAA
CCACAACCGG GTTCTAATAT TGCGACTGTG TACGCTCTGT TAGATTCACC AAGTGTAACA
GGGGCTTACC GTTTTGATAT CGAGCCGGGT GAGCGTTTAA AAATGAAGGT TGATGCGGCG
ATTTACCCGC GTAAAGCCAT CGAACGTTTA GGCGTTGCAC CACTGACCAG TATGTACATG
GTGGGTGAAA ACGATCGCCG CACTGGTTAC GACTGGCGTC AAGAGATCCA CGATTCAGAC
GGTCTTGCCA TGCACACGGG GAACGGTGAA TGGATTTGGC GTCCGCTGGG CAACCCAAGC
AACTTGCGTT TCAATGCCTA TAGCGATGAG AATCCAAAGG GCTTTGGTTT AATGCAGCGC
GACCGTAACT TCGACCATTA TCAAGATGAT GGCGTGTTCT ACGAGAAGCG TCCAAGCCTG
TGGATTGAGC CAACTGGCAA CTGGGGTAAA GGTTCGGTGC AGTTAGTGGA AATTCCAACA
CTGGATGAAA CCTTCGACAA TATCGTGGCG TTTTGGAACC CTGCAGAGCC CATTCAACCG
GGGCAAGAGT TACTCTACAG CTACAACATG TACTGGGGCG GTATTCCACC CGTGCAGTCT
CCCCGTGCTC GTGTGGTCGA TACCTTTACT GGTATTGGTG GTGTGGTTGG TCAAAAGCGT
AAGTACTATA GCAAGCGCTT CGTGATTGAT TTTGCTGGTG GTTCCTTACC TATGCTGGGT
AAAGATACCC AAGTGAAAGC GGTGATTTCG ACCTCTCAGG GGCGTGTAGA AATCGAATCT
GCTCGCCCAC AACATGCGAT CAACGGTTAC CGCGCTATGT TTGACCTAGT GCCGCCAGAA
GATAGCGTAG AGCCGATTAA CCTCAGAGTT TACTTAGAGG TAGATGGTCA GCCGTTAACT
GAGACCTGGA TGTACCAGTG GACACCACCA CCAGTGAACG AACGTGAGCT GCATAACGCC
GGTCATCTGC AGTAA
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| Protein sequence | MLDSGELMEI EVWLSLSSTV LHRAVTAILL TFAEKCQEVT PNQSLLMQPN LFPEQRHLNR
EPMVMPSVEA QSTRSRLQRI VGSVLLTCSV LLSLSACAAG KASAPQEEEF SYAWLKGYAH
TLATESYVSH KGELPKSLQG MSWDDYQQFH FKKKAALWRE DDSEFRAELF HLGLYFDTPV
HIYQLENGKA KLIEYSSSMF DYGKSKVKGS QLPKDLGFAG FRMQFNTDWQ RDVVAFLGAS
YFRAVGQEMQ YGLSARGLAV DTALPKPEEF PMFTRFWLEK PQPGSNIATV YALLDSPSVT
GAYRFDIEPG ERLKMKVDAA IYPRKAIERL GVAPLTSMYM VGENDRRTGY DWRQEIHDSD
GLAMHTGNGE WIWRPLGNPS NLRFNAYSDE NPKGFGLMQR DRNFDHYQDD GVFYEKRPSL
WIEPTGNWGK GSVQLVEIPT LDETFDNIVA FWNPAEPIQP GQELLYSYNM YWGGIPPVQS
PRARVVDTFT GIGGVVGQKR KYYSKRFVID FAGGSLPMLG KDTQVKAVIS TSQGRVEIES
ARPQHAINGY RAMFDLVPPE DSVEPINLRV YLEVDGQPLT ETWMYQWTPP PVNERELHNA
GHLQ
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