| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3043 |
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| Symbol | |
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| ID | 4253614 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3640579 |
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| End bp | 3642021 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119685 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_735171 |
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| Protein GI | 113971378 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.339991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.187596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAAAAACG ATGGTTATAC TTCCCTTAGC CAATTTGTTG ATCTGTTATT AGATGCCATC
TGCGTCGTCG ATAAAACCGG ACACTTCGAG TTTGTTAGTG CGGGCGCCGA GCGTATTTTT
GGCTATACCC CAGATGAAAT GATTGGTATG CAGATGTTAG ATCTCGTGTA TCCAGAGGAC
CGGGAGCGTA CCATTGCCGC AGCTAATGAC ATTATGGCGG ACAGCTTTAA GCTAGATTTT
GAAAATCGCT ATGTTCGTAA AGATGGCACC CTAGTCGATA TCCTCTGGTC TGCCCGTTGG
TCTGAGGACC GTCAGCAGCG GATTGCCGTG GCCCGGGACA TTACGAAGAG CAAGGCTGCC
GAGCGGCGTC AGGCTGCCCT GTATGAGATT TCTGAAGCCG TGCATGTAGC AGAAGATCTC
CTCGCCCTGT ATCGACGCAT TCACCAGATC ATGGCCAAGC TGTTGCCGAC AGATAATTTT
GCAATCGCGC TGTATGATGC CGATCTTAAT GAGTTAGATT TTCCCTATCG CGTGTTGGCG
GGGGAGCAAA ATCCGGCGCA ATCCGCCAGT TTCGATCATT TTACCGAGCA AGTGATCCAA
AGCGCAGAGT CTATGCTGCT TTGTCCCATG ACTCGGCCTG TTTCTGCGGT TGAAAGTGAG
CTTTGCTATT CGCAAGTCGG TCCGCAAAAA AATCAGCAAG ATAATCAGCA AGATAACCCG
CAAGCCATAA GTTGGCTTGG TGTGCCGCTA ACATTGCAGA AGGGCATTAT CGGCGCCTTG
ATTATGCATA GCACCCCAGA TTCTCGGGCT TATACTCAGC AGGATCGCGA ACTGGTTGAG
TTTGTGTCGA CACAAATCGC CTTCGCTATC GAGCGTCGGC AAATGCTGGC GCGATTGGAG
CATATTGCAC TTTATGATCA ACTCACCCAT TTGCCCAATC GCGAATTGTT TTATGACAGA
TTCCAGAAGG CGTTATCGCG CGCGAATCGC GAGTCGAGCT ATTTTTCCTT ACTCTACTTG
GATTTAGACA AGTTTAAATG GGTGAATGAT ACCTATGGCC ATGGTGTGGG TGATCTCTTA
TTGCAAATTA CCGCCCAGCG GATTTTAGGA TGCGTTAGAA GCTCGGATAC GGTTGCACGC
TTTGGTGGTG ATGAGTTTGT GGTCCTGCTA GAGCGTGTCG ATTCGGCGCA GAATACCTTA
CTCGTCGCCC AAAAAATCTT AGATGTGCTT AACCAACCCT TCGAGTTGGT GAATCAGCAG
ATCCATATTT TGCCTAGCAT TGGGATTGCT CTGTATCCCG AGCATGGCAG GGATGAAAAA
CAACTGCTGT CCTGCGCCGA TACGGCGATG TATAAGGCGA AGCGCAATGG TGGCAATCGG
ATTGAAATGG GTTATCAAGG CTTAAAGACC AGCTATTTCG AGCCTCTGAT CCAGCCCCAT
TGA
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| Protein sequence | MKNDGYTSLS QFVDLLLDAI CVVDKTGHFE FVSAGAERIF GYTPDEMIGM QMLDLVYPED
RERTIAAAND IMADSFKLDF ENRYVRKDGT LVDILWSARW SEDRQQRIAV ARDITKSKAA
ERRQAALYEI SEAVHVAEDL LALYRRIHQI MAKLLPTDNF AIALYDADLN ELDFPYRVLA
GEQNPAQSAS FDHFTEQVIQ SAESMLLCPM TRPVSAVESE LCYSQVGPQK NQQDNQQDNP
QAISWLGVPL TLQKGIIGAL IMHSTPDSRA YTQQDRELVE FVSTQIAFAI ERRQMLARLE
HIALYDQLTH LPNRELFYDR FQKALSRANR ESSYFSLLYL DLDKFKWVND TYGHGVGDLL
LQITAQRILG CVRSSDTVAR FGGDEFVVLL ERVDSAQNTL LVAQKILDVL NQPFELVNQQ
IHILPSIGIA LYPEHGRDEK QLLSCADTAM YKAKRNGGNR IEMGYQGLKT SYFEPLIQPH
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