Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2998 |
Symbol | |
ID | 4253569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3587152 |
End bp | 3587772 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638119640 |
Product | transcriptional regulator |
Protein accession | YP_735126 |
Protein GI | 113971333 |
COG category | [K] Transcription |
COG ID | [COG2345] Predicted transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00441752 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.169259 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACCA CTGATAAGAT TATTCAATTA CTCAAGTTGC ATGGTCCTTT AACGGCAAAG ACCCTAGCGG AAGAACTGGC ACTGACGACC ATGGGAGTTA GGCAGCATTT GCAGGCCTTA GAGGATGCGG GTGATGTTGA TATTGAAGAT AGGGTCGAAG GCCGTGGACG CCCAACCCGT TATTGGGGAT TAACCGAGCA GAGTCGCACT CACTTTGCCG ATCGCCACAG TGAGCTTAGT TTGCAATTGA TTGATTCCGT TAAAATGATA TTTGGCGATC AAGGCCTAGA TAAGCTGATC GAGCATAGGG AGCAAACGGC CATGCAGCAG TATCGCAGCG CGATGCTCGG CATGACGGAT ATAGCCAGTC GCCTAACGAA ACTGGTGGAG CTGCGTACCC TCGAGGGCTA TATGGCGACG CAGGAACAAG CCGATGGCGT TTTCTGGTTA CTTGAGAATC ACTGCCCAAT TTGCAGCGCA GCGACTAAGT GCCAAAACTT TTGCCGCTCC GAACTGCAAC AGTTCCAGCA ATTATTTGCC GATATCGCCA CTGTAAGCCG TGAAGAGCAT ATCATCGATG GCGCTCGTCG CTGCGCCTAT CGCATTGCGC CTTTATCTTA G
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Protein sequence | MKTTDKIIQL LKLHGPLTAK TLAEELALTT MGVRQHLQAL EDAGDVDIED RVEGRGRPTR YWGLTEQSRT HFADRHSELS LQLIDSVKMI FGDQGLDKLI EHREQTAMQQ YRSAMLGMTD IASRLTKLVE LRTLEGYMAT QEQADGVFWL LENHCPICSA ATKCQNFCRS ELQQFQQLFA DIATVSREEH IIDGARRCAY RIAPLS
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