Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2967 |
Symbol | |
ID | 4253538 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3545248 |
End bp | 3546204 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638119603 |
Product | transaldolase B |
Protein accession | YP_735095 |
Protein GI | 113971302 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000461015 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.264438 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAATA CATTAGAGCA ACTCAAGTCA TACACTACGA TTGTGGCCGA TACTGGCGAT ATTGAAGCGA TCAAACGCTA TCAGCCAGAA GACGCAACGA CCAACCCATC ACTCATTTTA AAAGCGGCTC AAATTCCCGA GTACAGTGCT TTAATCGACA ATGCTATCGC ATGGGCTAAA TTACAAAGTG CTGATATTGA GCAACAGATT GATGATGCCA GCGATAAACT TGCAGTGAAC ATTGGTGTCG AGATTTTAAA ACTGGTCCCT GGCCGTATTT CGACCGAAGT GGATGCCCGC TTATCCTTCG ATAAAGAAAA ATCCATTGCG AAAGCGCATA AGCTAGTACG TCTGTACCAA GAAGCGGGTG TAGATAAATC TCGCATTCTG ATCAAATTAG CCTCAACTTG GGAAGGCATT TGTGCCGCCA AAGAGTTAGA GCAAGAAGGC ATCAACTGTA ACTTAACCCT ACTATTTAGC TTTGCTCAAG CACGTGCCTG TGCAGAAGCT GGCGTGTACT TAATTTCTCC ATTCGTTGGC CGTATTCTCG ACTGGTACAA AAAAGACACA GGTAAAGACT ATGACGCAGT AAATGACCCA GGTGTTGTTT CTGTGACTGA AATTTACAAC TACTACAAAC AGCATGGCTA TAACACAGTA GTCATGGGTG CAAGTTTCCG TAATATCGGT GAAATCATCG AATTAGCGGG CTGTGATCGC CTGACTATTG GCCCTTCATT ACTCGAAGAG CTGGCAAACT CTCAAGTTAC TATTCAACCT AAACTCATTC CTGCCAGCAC CACAGTTGCT GCCGGTGAGC CTTTAACCGA AGCGCAATTC CGCTGGGACT TCAACCAAGA TCCTATGGCT GTCGACAAGT TAGCAGAAGG TATCCGTAAC TTCGCCATCG ACCAAGGCAA ACTCGAAGTC ATGCTCAAGG CAAAACTGGC AAACTAA
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Protein sequence | MANTLEQLKS YTTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPEYSA LIDNAIAWAK LQSADIEQQI DDASDKLAVN IGVEILKLVP GRISTEVDAR LSFDKEKSIA KAHKLVRLYQ EAGVDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG RILDWYKKDT GKDYDAVNDP GVVSVTEIYN YYKQHGYNTV VMGASFRNIG EIIELAGCDR LTIGPSLLEE LANSQVTIQP KLIPASTTVA AGEPLTEAQF RWDFNQDPMA VDKLAEGIRN FAIDQGKLEV MLKAKLAN
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