Gene Shewmr4_2967 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2967 
Symbol 
ID4253538 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3545248 
End bp3546204 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content45% 
IMG OID638119603 
Producttransaldolase B 
Protein accessionYP_735095 
Protein GI113971302 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000461015 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.264438 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAATA CATTAGAGCA ACTCAAGTCA TACACTACGA TTGTGGCCGA TACTGGCGAT 
ATTGAAGCGA TCAAACGCTA TCAGCCAGAA GACGCAACGA CCAACCCATC ACTCATTTTA
AAAGCGGCTC AAATTCCCGA GTACAGTGCT TTAATCGACA ATGCTATCGC ATGGGCTAAA
TTACAAAGTG CTGATATTGA GCAACAGATT GATGATGCCA GCGATAAACT TGCAGTGAAC
ATTGGTGTCG AGATTTTAAA ACTGGTCCCT GGCCGTATTT CGACCGAAGT GGATGCCCGC
TTATCCTTCG ATAAAGAAAA ATCCATTGCG AAAGCGCATA AGCTAGTACG TCTGTACCAA
GAAGCGGGTG TAGATAAATC TCGCATTCTG ATCAAATTAG CCTCAACTTG GGAAGGCATT
TGTGCCGCCA AAGAGTTAGA GCAAGAAGGC ATCAACTGTA ACTTAACCCT ACTATTTAGC
TTTGCTCAAG CACGTGCCTG TGCAGAAGCT GGCGTGTACT TAATTTCTCC ATTCGTTGGC
CGTATTCTCG ACTGGTACAA AAAAGACACA GGTAAAGACT ATGACGCAGT AAATGACCCA
GGTGTTGTTT CTGTGACTGA AATTTACAAC TACTACAAAC AGCATGGCTA TAACACAGTA
GTCATGGGTG CAAGTTTCCG TAATATCGGT GAAATCATCG AATTAGCGGG CTGTGATCGC
CTGACTATTG GCCCTTCATT ACTCGAAGAG CTGGCAAACT CTCAAGTTAC TATTCAACCT
AAACTCATTC CTGCCAGCAC CACAGTTGCT GCCGGTGAGC CTTTAACCGA AGCGCAATTC
CGCTGGGACT TCAACCAAGA TCCTATGGCT GTCGACAAGT TAGCAGAAGG TATCCGTAAC
TTCGCCATCG ACCAAGGCAA ACTCGAAGTC ATGCTCAAGG CAAAACTGGC AAACTAA
 
Protein sequence
MANTLEQLKS YTTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPEYSA LIDNAIAWAK 
LQSADIEQQI DDASDKLAVN IGVEILKLVP GRISTEVDAR LSFDKEKSIA KAHKLVRLYQ
EAGVDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG
RILDWYKKDT GKDYDAVNDP GVVSVTEIYN YYKQHGYNTV VMGASFRNIG EIIELAGCDR
LTIGPSLLEE LANSQVTIQP KLIPASTTVA AGEPLTEAQF RWDFNQDPMA VDKLAEGIRN
FAIDQGKLEV MLKAKLAN