| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2966 |
|---|
| Symbol | |
|---|
| ID | 4253537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3543881 |
|---|
| End bp | 3544999 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638119602 |
|---|
| Product | OmpA/MotB domain-containing protein |
|---|
| Protein accession | YP_735094 |
|---|
| Protein GI | 113971301 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00146812 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.498764 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTTAG AGAAAATGAT GAAGAATACA TTAAAAGTAG TTTTGCTTAC ATCAATGCTT
CCACTTGCTG CCAGTGCATC TCAAGAGTTA ACACCTTGGT ATGTTGGTGC AGGTTTAGGC
GTTAATAACT ATGAACACAT TGCAACTGAC AACGGCGATG ACAACCCATA CGCATGGGAC
ATCTTCGCAG GCTATATGTT TAATGACTAC TTTGGTGCTG AAATCGGCTA TCGTGATCTA
GGTAGTGCAG ATTGGACCTA TGCAGGCATT GGCAATGATG CAGACGTTAA AGGTGCAACT
CTTGGCTTAG TTGGCGTATG GCCACTAGGT AACCGTTGGA GCCTATCTGC TGAAGCCGGC
GCAATGTACT ACACCCTAGA AAACAACCAA CGCGTTGGTA GCGTTTCTAC TTCTTACAGC
GAAAACGACT TTGCACCTTA CTTCGGTGCA GGTGTTGGCT ACAACTTCAC CGATAACCTG
AAGTTACAAG CTAAATACCG TCGCTACGAA AACTTAGACG ATAACGCAGG CGCCAATGCG
ATTGTTCCAG TAAACGCTGA CAGCAACTAC TGGGGCTTAG AATTAAGCTA CCGTTTCGGA
TCTCCTGCTG CGCCAGTAGC TGCAGCTGTT GTTGCAGCAA CGCCAGTTGA CTCTGACAAC
GATGGTGTTT ACGACGATAA AGATCAGTGT CCAGCGACTC CAGCAACTCA CAAAGTTGAC
TCTGTTGGCT GTACTATCTA TGAAAACGTT AAGAAGCAAG AAGATGTAGG TTCTATCCAG
TTTGCTAACG ATTCTGCAGT AGTGAAGAAA GAGTACTACA AAGACATCGA AAGACTGGCT
AACTACCTGA ACAAGAACCC AGAATTCACT GTTGAAATTG CTGGTCACGC TTCTAACGTA
GGTAAACCAG ACTACAACAT GACTCTGTCT GACAAGCGTG CTGACGCTGT TGCTAAGATC
CTTGTTGAAA AATATGGTAT CAGCCAAAGC CGTGTAACTT CTAACGGTTA CGGTATCACT
AAGCCATTAG TCGCTGGTGA CAGTAAAGAA GCTCATGCAG CTAACCGTCG CATCGAAGCT
ATCGTGACAA CTACTGAAAA ACAACCTGTT CTGAAGTAA
|
|---|
| Protein sequence | MDLEKMMKNT LKVVLLTSML PLAASASQEL TPWYVGAGLG VNNYEHIATD NGDDNPYAWD
IFAGYMFNDY FGAEIGYRDL GSADWTYAGI GNDADVKGAT LGLVGVWPLG NRWSLSAEAG
AMYYTLENNQ RVGSVSTSYS ENDFAPYFGA GVGYNFTDNL KLQAKYRRYE NLDDNAGANA
IVPVNADSNY WGLELSYRFG SPAAPVAAAV VAATPVDSDN DGVYDDKDQC PATPATHKVD
SVGCTIYENV KKQEDVGSIQ FANDSAVVKK EYYKDIERLA NYLNKNPEFT VEIAGHASNV
GKPDYNMTLS DKRADAVAKI LVEKYGISQS RVTSNGYGIT KPLVAGDSKE AHAANRRIEA
IVTTTEKQPV LK
|
|---|
| |