| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2954 |
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| Symbol | ispH |
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| ID | 4253525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3528689 |
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| End bp | 3529645 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119590 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_735082 |
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| Protein GI | 113971289 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0885532 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.182811 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAG ATCCTACCAG CCCAAGTTTA AATATTATGC TGGCCAATCC TCGCGGCTTT
TGTGCTGGTG TGGATCGCGC CATTAGTATT GTCGAGCGCG CACTCGAGTT ATTTTCGCCG
CCGATTTATG TTCGCCATGA AGTCGTGCAT AACCGCTATG TAGTGCAAAA TCTGAAGGAC
CGCGGTGCCG TTTTTGTTGA AGAGTTAGAC CAAGTACCAG ATAACAATAT TGTTATTTTC
AGTGCTCATG GAGTTTCTCA GGCAGTGCGT GCCGAGGCTA AGGCGCGTGG GCTGCGAGTT
TTCGATGCGA CTTGTCCATT AGTCACCAAA GTGCATTTGC AGGTCACCCG TGCGAGCCGA
AAGGGGATTG AATGCATTTT GATTGGCCAT GAGGGACATC CAGAGGTGGA AGGCACCATG
GGGCAATACG ATAACCCTAA TGGTGGTGTT TATCTGATTG AATCTCCTGC AGATGTCGAA
ACTTTAGAAG TTCGTGATCC AAATAACCTC TGCTTCGTGA CTCAAACGAC GCTCTCGGTA
GATGATACCC TCGATATTAT CACGGCATTG CAAAAGCGTT TTCCTTCGAT TGAAGGTCCA
CGTAAGGATG ATATTTGTTA TGCGACGCAA AACCGTCAGG ATGCAGTGCG TAATTTATCG
GCCGATGTGG ATTTGTTAAT TGTGGTCGGT TCGAAAAACA GTTCTAACTC TAACCGCTTG
CGTGAATTGG CATTAAAAAC CGGAACTCAA TCTTATCTGG TTGATACCGC GGATGATATC
GATTCATCTT GGTTTGAAAA TGTGACTAAA GTTGCGGTGA CCGCTGGCGC ATCGGCACCA
GAAGTGCTGG TTCAGCAGGT GGTTCAAGCG ATTGCAAAAT TAGCACCGAG TGTCGTCACC
GAAGTTGAAG GGCGTAAAGA AGATACCGTC TTTGCCGTAC CTGCGGAATT ACGCTAG
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| Protein sequence | MKLDPTSPSL NIMLANPRGF CAGVDRAISI VERALELFSP PIYVRHEVVH NRYVVQNLKD
RGAVFVEELD QVPDNNIVIF SAHGVSQAVR AEAKARGLRV FDATCPLVTK VHLQVTRASR
KGIECILIGH EGHPEVEGTM GQYDNPNGGV YLIESPADVE TLEVRDPNNL CFVTQTTLSV
DDTLDIITAL QKRFPSIEGP RKDDICYATQ NRQDAVRNLS ADVDLLIVVG SKNSSNSNRL
RELALKTGTQ SYLVDTADDI DSSWFENVTK VAVTAGASAP EVLVQQVVQA IAKLAPSVVT
EVEGRKEDTV FAVPAELR
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