| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2953 |
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| Symbol | |
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| ID | 4253524 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3527907 |
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| End bp | 3528473 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638119589 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_735081 |
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| Protein GI | 113971288 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.192573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.254456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTAAAT TCGAACGATT GACGCATAAC AGAATTCAAC GGGGCTTCTC TTTAATTGAA
GTGCTTGTCG CATTGGTGAT TCTAGTGATT GGCTTGATCG GTATTTTTAA TTTACACATT
GTGGCTAAAC GCGGCAGCTT TGAGTCATTT CAACAGACTC AAGCATCTTA CTATGCCACT
GACATCATTA ATAGAATGAA GCTCAATCGT ACCCAGCTGA CTAGTTATGA GGGAACATAT
AATTTTGAAG AACCTCCTTC TATGGCGGAG AATTGTGAAG CTCAGCTATG TTCTCCTGAG
CAAATGGCGA CATGGGACAA ATACGATTGG GGCCGTGCTT TATTTGGTTC TTTAGAGGTT
GTTGGGGGGC AAAATGTTGG AGGGTTAGAT ACTCCAACAG CTTGTGTGCA GGTTAGTGGA
AATGATGTTT TAGTTGTGAT CGTTTGGAAA GGGATCCGTA GCACAAACAT TGATACTTCA
GCAGTTGAGG ATATATCTGG GGGATGTGAT TCAGAGGCGG AAACGCCAAA TCGTCGTATT
TTTTCAATAA GAACAGTGAT TATATAG
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| Protein sequence | MTKFERLTHN RIQRGFSLIE VLVALVILVI GLIGIFNLHI VAKRGSFESF QQTQASYYAT
DIINRMKLNR TQLTSYEGTY NFEEPPSMAE NCEAQLCSPE QMATWDKYDW GRALFGSLEV
VGGQNVGGLD TPTACVQVSG NDVLVVIVWK GIRSTNIDTS AVEDISGGCD SEAETPNRRI
FSIRTVII
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