| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2952 |
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| Symbol | |
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| ID | 4253523 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3526893 |
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| End bp | 3527906 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638119588 |
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| Product | prepilin-type cleavage/methylation-like protein |
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| Protein accession | YP_735080 |
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| Protein GI | 113971287 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.501472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.202788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATGTT CAAGAACGTT AGCCTCTACT CATTCAGCTA GAACCAACCA ACGAGGTTTA
TCACTCGTCG AGTTAATGGT TGCCATGGTT ATTGGTCTGT TTTTAACTGC TGGCGTTTTT
ACGATGTTCA GTATGTCTTC TTCTAATGTC ACCACCACTA GTCAGTTTAA TCAATTGCAG
GAAAATGGCC GTATTGCTTT AGCTATATTA GAACGCGATA TTACCCAGCT AGCTTTTATG
GGGGATATGA CAGGTACCGA TTTTATTATT GGCACGAATA CTACTGATGA AGTGCCTACT
CTGTCATCAG ATTGTATAGG TGCAGGCTTG AATAACGGAA CTTTGCCTAA TACTCAATCC
GCACACTTCA GAAGGCTTTG GGGTTATGAG TCAGTATCCT CTGAAAGTTT GAGCTGTATT
TCAAGTTCTA ATGTTTATGC TGGCATAGAT AAAAAAGGCA CTGATGTATT GCAGCTTAAA
CGCTTACTCG GGCCAAGTGT TGCAGAGGGG AATGATTCCG CCATTTTCAT TGCTGTAAAC
TCGACTGAAG CAGTGTTTTT TGTAGGCGAT AAGCCGGTTT TACTTCCTGA TAATTCACGA
ATTTGGGAGT ACCAACACCA TGTCTATTTT ATTGCCAATG ATGCTAGTGG TATTCCTATC
CTACGGCGTA AAACTTTAAC GAGTTCAGGT ATGAGCAACG ATGAACAGCT TGTTGAGGGG
ATTGAAAATA TTCGGTATTT ATATGGATTT GATAATGATG GTGATAGTAC TCCGGACAGT
TTTATGCCAG CTAAAGATGT CACAACGCTT ATGTGGGATA ATGAAGGATT TCAGCGTTTA
GTGGCGATTA AGGTATTTCT ACTGGTTCGT TCAATCAATG AGGATAAAAC CTACAGCAAT
GATACAGAAT ATCAATTAGG CGATAAAACA ATTAAGGCTC CTGCTGACCA TTACCGCCGT
AAAATATTAT CGACGACAAT CGTATTAGAA AACCCTGTAC TAATACGTAG CTAA
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| Protein sequence | MKCSRTLAST HSARTNQRGL SLVELMVAMV IGLFLTAGVF TMFSMSSSNV TTTSQFNQLQ
ENGRIALAIL ERDITQLAFM GDMTGTDFII GTNTTDEVPT LSSDCIGAGL NNGTLPNTQS
AHFRRLWGYE SVSSESLSCI SSSNVYAGID KKGTDVLQLK RLLGPSVAEG NDSAIFIAVN
STEAVFFVGD KPVLLPDNSR IWEYQHHVYF IANDASGIPI LRRKTLTSSG MSNDEQLVEG
IENIRYLYGF DNDGDSTPDS FMPAKDVTTL MWDNEGFQRL VAIKVFLLVR SINEDKTYSN
DTEYQLGDKT IKAPADHYRR KILSTTIVLE NPVLIRS
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