Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2949 |
Symbol | |
ID | 4253520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3522439 |
End bp | 3522882 |
Gene Length | 444 bp |
Protein Length | 147 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638119585 |
Product | methylation site containing protein |
Protein accession | YP_735077 |
Protein GI | 113971284 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0811797 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.399462 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA ATAGACTGCA AGGGTTCACT TTAATTGAAG TCATGATCGC TGTTGTTATT GTGGGGATTT TGGCTTCGAT AGCATATCCC TCATACATTG ATTACGTGGT TAAGAGTGGA CGGTCTGAAG GTGTTGCGGC GGTGATGAAG GTTGCAAATC TTCAAGAGCA GTATTATTTG GATAATCGCT CATATGCCTT AGATATGAAA TCTCTAGGTT TAGATAAAGA TCCGTTTGAA ACGGAGCATG GGTATTATAC GGTAGATTTT CTTTCTGATG ATGCTAAAAA TGTAGCGGCA GCCGATGAAC CTCCAAGATA TATAGAATTT ATCATCACCG CCACAGTGAA TCCTGATAGT CGTCAAGTAA AAGATACTAC CTGTGCAACT ATTACGATGA CATCTGCTGG TGTAAAGGGG CCTTCTGCGG AGTGTTGGAA ATGA
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Protein sequence | MKKNRLQGFT LIEVMIAVVI VGILASIAYP SYIDYVVKSG RSEGVAAVMK VANLQEQYYL DNRSYALDMK SLGLDKDPFE TEHGYYTVDF LSDDAKNVAA ADEPPRYIEF IITATVNPDS RQVKDTTCAT ITMTSAGVKG PSAECWK
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