Gene Shewmr4_2949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2949 
Symbol 
ID4253520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3522439 
End bp3522882 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content41% 
IMG OID638119585 
Productmethylation site containing protein 
Protein accessionYP_735077 
Protein GI113971284 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0811797 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.399462 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA ATAGACTGCA AGGGTTCACT TTAATTGAAG TCATGATCGC TGTTGTTATT 
GTGGGGATTT TGGCTTCGAT AGCATATCCC TCATACATTG ATTACGTGGT TAAGAGTGGA
CGGTCTGAAG GTGTTGCGGC GGTGATGAAG GTTGCAAATC TTCAAGAGCA GTATTATTTG
GATAATCGCT CATATGCCTT AGATATGAAA TCTCTAGGTT TAGATAAAGA TCCGTTTGAA
ACGGAGCATG GGTATTATAC GGTAGATTTT CTTTCTGATG ATGCTAAAAA TGTAGCGGCA
GCCGATGAAC CTCCAAGATA TATAGAATTT ATCATCACCG CCACAGTGAA TCCTGATAGT
CGTCAAGTAA AAGATACTAC CTGTGCAACT ATTACGATGA CATCTGCTGG TGTAAAGGGG
CCTTCTGCGG AGTGTTGGAA ATGA
 
Protein sequence
MKKNRLQGFT LIEVMIAVVI VGILASIAYP SYIDYVVKSG RSEGVAAVMK VANLQEQYYL 
DNRSYALDMK SLGLDKDPFE TEHGYYTVDF LSDDAKNVAA ADEPPRYIEF IITATVNPDS
RQVKDTTCAT ITMTSAGVKG PSAECWK