Gene Shewmr4_2946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2946 
Symbol 
ID4253517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3520965 
End bp3521477 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content42% 
IMG OID638119582 
Productmethylation site containing protein 
Protein accessionYP_735074 
Protein GI113971281 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4970] Tfp pilus assembly protein FimT 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.105075 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.412318 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTC TACCACATGG CTTTAGCTTG ATTGAACTCA TCACTACGGT ATCCATTTCT 
ACCATTCTGT TATCGATTGG TGCTCCCTCG TTAAGCGATT TCAACACGAG ATTCAGGGCT
GATAGTAATA TCAAAGTCAT CCAGCAAACA CTGATGCTCG CCCGAAATCA TGCTATTTCC
TTCAATCGAA AAGTGACTGT CTGTGCCTTA AGCAACAATC AGTGCACATC TAACTGGCAG
CTTGGTTTAA CAGTATTTAT TGATGTTAAC AGCAATAGTC AACTCGATGG CAATGAAACG
ACTATTTTTA CCACTAACGC TTTTAATGCC AGAGATACAG TTATCTACAA TCGAACCTTA
ATTCGTTTTC AACCAGATGG TCTTGCCTCT GGTACTAATG GAACATTGAA GTATTGCCCA
TCAAGTCCCA CCAGCCCATA CTCACGAGGG ATTGTGGTAA ATCAAGCTGG CAGGGCAAGA
CTATCGACTG ATGCCAATAT CCGCTGCGGA TAA
 
Protein sequence
MKTLPHGFSL IELITTVSIS TILLSIGAPS LSDFNTRFRA DSNIKVIQQT LMLARNHAIS 
FNRKVTVCAL SNNQCTSNWQ LGLTVFIDVN SNSQLDGNET TIFTTNAFNA RDTVIYNRTL
IRFQPDGLAS GTNGTLKYCP SSPTSPYSRG IVVNQAGRAR LSTDANIRCG