| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2942 |
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| Symbol | |
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| ID | 4253513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3514740 |
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| End bp | 3517403 |
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| Gene Length | 2664 bp |
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| Protein Length | 887 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638119578 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_735070 |
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| Protein GI | 113971277 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.201081 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.230913 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCAT CATCCTTTAA GAAAAGTGTA CTAGCTACAA ACATTGCTAT CCTACTCGGC
AGCGCTGTTT CAATCAGTGC TGTTGCTGCA GAGGCTGAAG CAGCCGCTGC AGCAGCGGTA
CCTGAAAATA TTGAAAAGAT TGAAGTGCGC GGTATTCGTG CTTCAAACAA AGCCAATATC
AACGAAAAAC GATTTTCAAA TGCAGTTGTT GATGCGGTAA CGGCTGAAGA TATCGGTAAA
TTTCCTGATT CTGACGTAGG TCAAGCTTTA GGACGTGTTC CTGGTGTGAC TGTTGGCCGC
ACATTTGGTC AAGGTAGCTC TGTTTCTATT CGTGGTACCG ATCCGTTAAT GACGTTGACT
ACTTTGAATG GTCAAAACGT TGCATCAACA GGTTGGTATG ATCAAATGAA CGTAGACCGT
TCATTCAACT ACTCTATGCT GCCATCAGAA CTGATTGGTG GTATGGAAGT GTATAAGTCT
ACCCAAGCTA ACCTCGTTGA GGGTGGTATC GGTGGTACTG TGATTGTTAA GACTCGTAAA
CCGTTAGATA TGGATGCGAA CTCTGTATTT GCCTCTGTTA AAGGTGAATA CGGTTCAGTG
AACGAAGATG TTGCACCTGA GCTATCTGGT TTATATAGCT GGAAAAATGA CGATGAAACC
TTCGGTGTTT TAGTCGCTGG GTCATACATT GACCGTGAAT ATCTGCGTAC TGGTACTGAA
GCGGACCTCG ACTGGGGCGG CCGTTCTTCG GTTCAACCCT CTAGCTTCCT GCAAGAACAA
GAGCGGACTG CGCTCGATGC AACAGTGCAA TTCCGTCCAA CAGACAATTT AGAATTTGGT
GCTCACGTAC TATCACTCAA GCTTGGTGCT GATAGTATTG GTGCCAACAT GTATATCGAA
ACCGACACTA ACTGGGGTGA AGGAGCTTCT CACTGTAAAC AGTTTAACGC TGCGGGTGTG
TGTACTCTGA GCGTAACTCC AGAAAGTGAC CCATCTAACG TGTTCTTCCA AAACTGGGCA
CGTAAAGGTG AAATGACATC TGATACCTTT GAGTTAAATG CGGATTATAA AGGTGACGGT
TTTGCTATCT CTGGTGTAGC AGGTAAAACT AAGGCTGAAG GCGGTACTCA GATGAGTGCT
AACTTTGGTT ATGGTTGGTG GGGTGACAAG TTTGGTCAGG TGAAATGGGC GGGTACCGTT
GATGCGACTG GCAAGCAAAT TGACATCAAT GGCCGTGACA TGGGATTCAC CCAAGATCAG
CTAGACACTA CTGTTGGTAC TTCAACTTGG ACTGGTATCA AAGGACCTAA CTCTGACGAA
GAAACTTATC TGCAGTTAGA TGTTGATTTT GACTTAGATT TTGGCGTTAT CAATAAGTTT
GAAACCGGCG TGCGTTACAC TCAACATGAA TTTGAAAAGA GTGAATACCG TGCTATTTAC
GACCCAGCTA AGAAGAATGA GTTCAAGACT TCAGATCTTT ACAGCGGCAC CATGAAGTTA
GGCTATGACG GTTGGACTAT TCCTAAGGCC GACCTTGATG CAATGATCAA CGCGACAGAA
TCTCTAGTTG ACCAATTTGC TTATAGCCGT TCAGCTTACG GCCTGATCGA AGAAGATAAC
TTCTCGATGT ACGGTATGTT CTCATTCGAC GGTGAAGGCT TCCGTGGTAA CTTCGGTTTA
CGCTACATCC AAACTGACGT GACTTCTAGC GGTCATATCA TCGATAACTC GCCGGCAGAC
GTTTTAAGTG TGAACCAAGG TTGGAGCGAA GAAATCCATA GCATCAGCGA CAGCTACAGT
GATGTATTGC CAAGCTTTAA CATTTCTTTC GACCTTGCAC CTGACTTGAT CTTACGTATG
TCAGCAGGAC AAGCAATTAC TCGTCCTAAC TACGATAACT TATTCTTATC AACATCAACT
GGTTATCCAG ATGATAGACG TGGTAACGAA GAGATCACCT ACGGTAATCC TGGCTTAAAG
CCAATGAAGT CTTCACAAGC TGACTTAAGC CTTGAATACT ACTATGGTGA TGGCAACTTA
GTTTCTGCTA CATACTTTAT CAAAGATATC AGTAACTTCA TTGTTGCTAC TACCCAATAC
AATCAACAGA TTGGCGTAGT GAACAATGAC TTAGAAACCC CTGCCGATAA TTGGACTGTA
AACAATTATG AAAACGCGGG TGGTGGTGAG ATCGATGGTA TCGAGTTACA GTTAAACCAC
GCTTTCGACA ATGGTTTCGG TGTTAACGCT AACTATACCT ACGCAGATGG TACCGCTCCT
GCCGAAGTGT ATACTGATAA CATCGGTATG TTCACTGAGT CTTCTAAGCA CAGTGCGAAC
TTAGTGGGTT ACTGGGAAAA TGATGATTTC TCAGCTCGTG CAGCTTATAA CTGGCGTTCT
GAGTATATGG TTCGTGAATA CGGCAAATAC TACGGTAACC GCATGCACGA TGCCTTTGGT
ACTCTGGATG TGACTTTAGG TTGGAACGTT ACAGAAGCCA TTGCTTTACG TCTTGAAATT
GTTAACTTAA CAGCTGAAGA CGATGTGCAA TATGGTGCGG CTGGCGTAGG CACAGAAGTT
AAACCTGCAC TCCAAGACGA TTTCCCAACA TGGTCGTTTA AAGGCGAAAC TACCTACAAG
TTAGGCGCAA GTTTTGTATT CTAA
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| Protein sequence | MRPSSFKKSV LATNIAILLG SAVSISAVAA EAEAAAAAAV PENIEKIEVR GIRASNKANI
NEKRFSNAVV DAVTAEDIGK FPDSDVGQAL GRVPGVTVGR TFGQGSSVSI RGTDPLMTLT
TLNGQNVAST GWYDQMNVDR SFNYSMLPSE LIGGMEVYKS TQANLVEGGI GGTVIVKTRK
PLDMDANSVF ASVKGEYGSV NEDVAPELSG LYSWKNDDET FGVLVAGSYI DREYLRTGTE
ADLDWGGRSS VQPSSFLQEQ ERTALDATVQ FRPTDNLEFG AHVLSLKLGA DSIGANMYIE
TDTNWGEGAS HCKQFNAAGV CTLSVTPESD PSNVFFQNWA RKGEMTSDTF ELNADYKGDG
FAISGVAGKT KAEGGTQMSA NFGYGWWGDK FGQVKWAGTV DATGKQIDIN GRDMGFTQDQ
LDTTVGTSTW TGIKGPNSDE ETYLQLDVDF DLDFGVINKF ETGVRYTQHE FEKSEYRAIY
DPAKKNEFKT SDLYSGTMKL GYDGWTIPKA DLDAMINATE SLVDQFAYSR SAYGLIEEDN
FSMYGMFSFD GEGFRGNFGL RYIQTDVTSS GHIIDNSPAD VLSVNQGWSE EIHSISDSYS
DVLPSFNISF DLAPDLILRM SAGQAITRPN YDNLFLSTST GYPDDRRGNE EITYGNPGLK
PMKSSQADLS LEYYYGDGNL VSATYFIKDI SNFIVATTQY NQQIGVVNND LETPADNWTV
NNYENAGGGE IDGIELQLNH AFDNGFGVNA NYTYADGTAP AEVYTDNIGM FTESSKHSAN
LVGYWENDDF SARAAYNWRS EYMVREYGKY YGNRMHDAFG TLDVTLGWNV TEAIALRLEI
VNLTAEDDVQ YGAAGVGTEV KPALQDDFPT WSFKGETTYK LGASFVF
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