| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2927 |
|---|
| Symbol | |
|---|
| ID | 4253498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3495279 |
|---|
| End bp | 3496619 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638119563 |
|---|
| Product | beta alanine--pyruvate transaminase |
|---|
| Protein accession | YP_735055 |
|---|
| Protein GI | 113971262 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0161] Adenosylmethionine-8-amino-7-oxononanoate aminotransferase |
|---|
| TIGRFAM ID | [TIGR00508] adenosylmethionine-8-amino-7-oxononanoate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.162261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGATT CACCCTACAA CACAACGCAT GAGCATCCTT CTCTCGAACA TTATTGGATG
CCCTTTACCG CCAACCGCCA GTTTAAAGCT AGCCCTCGCC TGCTCGCCCA AGCAGAAGGC
ATGTATTACA CGGATATCAA TGGCAACAAG GTATTAGACT CAACGGCTGG CTTGTGGTGT
TGTAACGCCG GCCATGGACG CCGTGAGATC AGCGAAGCCG TTAGCAAGCA AATTCGCGAG
ATGGATTACG CGCCGTCCTT CCAAATGGGT CATCCCCTCG CCTTCGAACT CGCCGAGCGG
TTAACTGAAC TCAGCCCTGA AGGACTCAAT AAGGTCTTCT TTACCAACTC TGGATCAGAG
TCCGTCGATA CCGCGCTTAA AATGGCACTC TGTTACCACA GAGCCAATGG CCAAGCATCG
CGCACCCGTT TTATTGGCCG TGAGCTGGGC TACCATGGCG TAGGATTTGG TGGCATTTCA
GTGGGGGGCT TGAGCAATAA CCGTAAAGCC TTTAGTGGCC AACTGCTGCA AGGCGTGGAT
CACCTGCCGC ACACCTTAGA TATTCAAAAT TCAGCCTTTA GCCGTGGCTT ACCTAGCCTA
GGTGCCGAAA AAGCCGAAGT ATTAGAACAA CTCGTCACAC TCCACGGCGC TGAGAATATT
GCCGCCGTTA TCGTTGAACC TATGTCGGGT TCGGCGGGGG TGATTTTACC GCCACAGGGT
TACTTAAAGC GCCTACGCGA AATCACCCAA AAGCACGGCA TCCTGTTGAT TTTTGATGAG
GTGATCACTG CCTTTGGTCG CGTCGGCGCC GCCTTTGCCA GCCAGCGCTG GGGCGTTATC
CCCGACATAA TCACTACGGC CAAGGCCATC AATAATGGCG CAATTCCAAT GGGCGCCGTG
TTTGTGCAGG ATTTTATTCA CGATACCTGT ATGCAAGGCC CCACCGAACT CATCGAGTTT
TTCCACGGTT ATACCTATTC AGGGCATCCA GTAGCGGCGG CCGCGGCGCT CGCTACGCTG
TCCATCTATG AAAACGAACA GCTATTTGAA CGCAGCTTCG AACTTGAGCG TTATTTCGAG
GATGCCGTTC ACAGCCTCAA AGGTTTGCCG AATGTGATTG ATATCCGCAA CACTGGATTG
GTCGCAGGCT TCCAACTCGC GCCGAATAGC CAAGGCGTAG GTAAACGAGG TTACAGCGTG
TTCGAGCATT GTTTCCATCA AGGCACGCTC GTGCGGGCGA CGGGCGATAT TATCGCCATC
TCCCCACCGT TAATCGTAGA TAAACATCAA ATAGACCAAA TAGTTAACAG CCTAAGCGAT
GCAATTCGCG CCGTAGGATG A
|
|---|
| Protein sequence | MADSPYNTTH EHPSLEHYWM PFTANRQFKA SPRLLAQAEG MYYTDINGNK VLDSTAGLWC
CNAGHGRREI SEAVSKQIRE MDYAPSFQMG HPLAFELAER LTELSPEGLN KVFFTNSGSE
SVDTALKMAL CYHRANGQAS RTRFIGRELG YHGVGFGGIS VGGLSNNRKA FSGQLLQGVD
HLPHTLDIQN SAFSRGLPSL GAEKAEVLEQ LVTLHGAENI AAVIVEPMSG SAGVILPPQG
YLKRLREITQ KHGILLIFDE VITAFGRVGA AFASQRWGVI PDIITTAKAI NNGAIPMGAV
FVQDFIHDTC MQGPTELIEF FHGYTYSGHP VAAAAALATL SIYENEQLFE RSFELERYFE
DAVHSLKGLP NVIDIRNTGL VAGFQLAPNS QGVGKRGYSV FEHCFHQGTL VRATGDIIAI
SPPLIVDKHQ IDQIVNSLSD AIRAVG
|
|---|
| |